Scomber scombrus (Atlantic mackerel): 133999767
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Entry
133999767 CDS
T10651
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514
Cell adhesion molecule (CAM) interaction
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133999767 (lrrc4ba)
04517 IgSF CAM signaling
133999767 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133999767 (lrrc4ba)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
NGL family
133999767 (lrrc4ba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
LRR_14
ig
V-set
Ig_2
LRRNT
VEGFR1-3_N_Ig-like
Motif
Other DBs
NCBI-GeneID:
133999767
NCBI-ProteinID:
XP_062295054
LinkDB
All DBs
Position
18:complement(5655511..5661058)
Genome browser
AA seq
736 aa
AA seq
DB search
MRIATLTCLPGPSPFLFLLAQLLLRLLLPGPELVGAASSCPSLCTCSNQASRVICTRQNL
EEVPESISVNTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSHAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDF
ISDAAFVGLINLRYLNLGMCGLKDIPKLTALVRLEELELSGNRLEIIRPGSFQGLVSLRK
LWLMHSQVSVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPFLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTSTSTTSVNWITPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNAAGNTTATAVLNVTAADASVNYTYFTTVTVETVETPGNEESALVAINETTIRVHPGP
TPSGHLWSEGFPTTASSLSASWSSSSPRATRPTFTVPITEPGFSGLDDVMKTTKIIIGCF
VAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDELGAGASGRGSGISGGSTVT
QTGSSGLGGGQSLRLHHPEIVNLPNLARSEHLNHYYKTHHFNNNMMSLGMGTGTGMGLNN
NNNPSPCSQNMSISCSQVPTSTTGGTLSGGTLPSPVPLPLPQLGLHSSLKGLMGKGQNEP
LLFKSGSKENVQETQI
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgccacgctgacctgccttcccggcccttcccccttcctctttctattggcc
cagctgctactgcggctcctcctccctgggccggagttggtgggagccgcatcctcttgc
ccctccctgtgcacctgctccaaccaggccagccgagtcatctgcaccaggcaaaacctg
gaggaggtccccgaaagcatatcagtcaacacacgatacctcaacctgcaagagaactca
atacaggttatcaagtcagacactttcaagcacttgaggcaccttgagatcctccagctc
tccaagaatcagatccgtcagattgaagtaggagcgttcaatggcctccccaacctcaac
acactggagctcttcgacaaccgcctcacactggtgccatcacatgcctttgagtacctc
agcaagctgcgggagctatggctgcgcaacaaccctattgagactttgccaggctatgcc
ttccaccgtgtgccctcgctgcgtcgcctggaccttggtgagctcaagaagttggatttc
atctctgacgcagcctttgtgggcctcatcaatctacggtacctgaacctgggcatgtgt
gggctgaaggacattcccaaactgactgctcttgtgcgtttggaggagctggagctgtca
ggaaaccggctggagatcatccgacccggttccttccagggcttggtgtctctccgcaag
ctgtggctcatgcattcacaggtgtccgtcattgagcgcaacgcctttgatgacctgaaa
aacctggaggagctcaacctgtctcataactctctacactccttgccccatgacctcttc
acaccccttcaccagctggagagggtgcaccttaaccacaacccctgggtctgcaactgt
gatgtgctttggcttagttggtggctgaaagagacggtgccaagcaacaccacctgctgt
gcccgctgccatgctcccccattcttaaagggcaagtacatcggagagcttgaccagagc
cacttcacctgctatgcgcccgtcatcgtcgagccacctacagacctcaatgtcacggag
ggtatggctgctgagctcaagtgtcgcacaagcacctccacaacatctgtcaactggatc
acccccaacggcactctcatgacccacggctcctaccgggtgcggatatccgtcctgcat
gatggcacactcaacttcacgaatgtcaccctgcgagacacgggccagtacacctgcatg
gtcaccaatgcagctggcaataccacggcaaccgctgtcctcaatgtcaccgccgctgat
gccagtgtcaactacacctactttacaacagtcaccgtggaaacagttgagacgccggga
aatgaagaatccgcattagttgccattaatgagaccaccattcgtgttcatcctggtccg
actccctcaggccacctgtggtcggaaggttttcctaccacagcctcttctctgtcagcc
agctggtcctcctcctctccgcgggccactcgacccaccttcactgtgcccatcacggaa
ccgggcttctcaggcctggatgatgtgatgaagaccaccaagatcatcattggctgcttc
gtagccattaccttcatggcagcagtgatgctggtggtgttctacaagctaaggaagcaa
caccagctgcataaacaccacggccccgctcgtgccatcgagatcatcaatgtggaggat
gagctgggtgccggggccagtggtcggggcagcggtatctcaggaggctccaccgtgacg
cagactggaagcagtggactaggagggggccagagcctcaggttgcaccacccagagata
gtcaacctgccgaacctggcccgatcggagcacctcaaccactactacaaaacccatcac
ttcaacaacaacatgatgagtttgggcatgggcacgggtactggtatgggcctcaacaac
aacaacaacccctcgccttgctctcagaacatgtccatatcatgttcccaggttccaacg
tctaccactgggggtactctctcgggtggcacccttccctcccccgtgcccctgcccctg
ccccagttgggtctccacagttctctgaaaggcctaatgggtaaagggcagaatgagcca
ctgctttttaaaagcggctccaaagaaaatgtgcaagagactcaaatctga
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