Scomber scombrus (Atlantic mackerel): 133999779
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Entry
133999779 CDS
T10651
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1-like
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133999779
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133999779
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
Ion_trans
LSDAT_prok
YVC1_C
Damicornin
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
133999779
NCBI-ProteinID:
XP_062295108
LinkDB
All DBs
Position
1:complement(38567682..38590668)
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AA seq
1447 aa
AA seq
DB search
MDSKGRRGTNGSIKRSSIKRSASSGSRKVQRAWIERTFQKRECIQIIPGKDASRCSCGQL
VSQHSGIREELSLVQLEAAERWIPLKHTQTSSTDAYGVLEFQEGGHVNKAMYIRVSYDSK
PDSLLHLMVKEWQLELPTLLISVHGGLQSFELPPKLKQVFGKGLIKAAVTTGAWIFTGGV
STGVIRHVGDALKDHSSKSRGRVCAIGIAPWGILENRNDLIGRDVTRPYQTMSNPLSKLA
VVNSSHSHFILSDNGTSGKYGAEVRLRRQLEKHIALQKINTRLGQGVPVVCLILEGGPNV
ISIVLESLKEEPPVPVVVCDGSGRASDIISFAHRYCEEDGLVSDNVKDQLIVTIQKTFNY
TRSQALHLFLLLMECMKKKALVSINQSISVSSLTLDRPKSPAAQRSAAAGGGGGGGGGKG
KARGKKGKGAKTKPEPPEETDPRKLELLNWVNSLEQAMMDALVLDRVDFVKLLIENGVNI
HHFLTIPRLEELYNTKLGPANTLHFVVRDVKKGNLPPDYQITLIDIGLVLELLMGGAYRC
KYTRKSFRALYNNLYGLKRPKALKLLGMEDDEPRPKGKGKKNKKKEEEEDIDVDDPEVCR
FQYPFHELMVWAVLMKRQKMALFLWQRGEEAMAKALVACKLYRAMAHESSQSELVDDIYQ
DLENNSKEFGQLAYELLDQSYKHDEQVAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHT
CSQMLLTDMWMGCLRMGKSNSLKVILGIIFPPTILLLEFRLGDESSFHSSKQNEDSKIKD
NDNKSNKDSVSNVDTTSKKGDEEENQKKHRKRVPIGKKIYEFYNAPFTKFWFNTIAYLVY
LSLYNYIILVKMERWPSLQEWIVISYIITLGLEKARQILMSEPGKLKQKVNVWLEDYWNI
TDLVAICVFLLGLLLRLQSEPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGK
MMIDMLYFVVIMLVVLMSFGVARQAILHPDEKPTWRLARNIFYMPYWMIYGEVFADSIDR
KTRVHIYAMEINPPCGDNMYDEDGKKLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVF
NNTFFEVKSISNQVWKFQRYQLIMTFHDRPILPPPLIIFPHIYIVLKRLCCRCRRRPEGD
HDDRERRLQLVLSSEELKSLHEFEEQCVDEYFREKDDEKQSSNNERIRVTTERVENMSMR
LEEVNEREHSMKASLQTVDLRLAQLEEFSSRMVNAVEKLAGIELVRSRSRGSSVCEPAAL
LRHASINSADGYSLYRYQLDHEDRVSVCGDSEDRRVHLSPERRGGNTEGTTGRRQELFGS
TLEVKGQRERSLSNVDILISPCDPAQRPESVAMETGEETPGTLPLERSKVTLPSSPEGEE
EEDRKYPPLFGGEEEEDRKYPPLRSKSLNTNPRKTRTPRPTGSVSDLVSAFSGGAGRDLD
QNQNQKL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atggacagtaaagggagaagagggacaaacggatccatcaaacgttcgtccatcaagcgc
agcgcgtcgtctggatccagaaaggttcagagagcttggatcgagagaaccttccagaag
agagaatgtatccagattattcctggaaaagatgcaagcaggtgtagttgtggtcagctg
gtatctcagcactcaggtatcagggaggagttgtctctggtgcagctggaggcagcagag
cgatggattcctctcaaacacactcagaccagttctactgatgcatacggagtcctggag
ttccaggaggggggtcacgtcaacaaggccatgtacatccgggtctcctatgactctaaa
cccgacagtctgctccacctgatggtgaaggaatggcagctggagcttccaacgctgctg
atctccgtccacggaggcctgcagagcttcgagctgccgccgaaactcaagcaggtgttt
ggaaaaggactcatcaaggctgccgtcaccaccggagcctggatcttcaccgggggagtc
agcaccggagtgatccggcatgtgggtgacgctctgaaggaccactcctctaagtcgaga
ggtcgtgtttgtgcgatcggaatcgctccgtggggaatcctcgagaaccgaaacgatctg
atcggcagagacgtgacgcggccctatcagacgatgtctaaccctctcagtaagctggcc
gtggtgaacagcagccactcacacttcatcctgtccgataacgggacgagcgggaagtac
ggagccgaggtccgtctgcgccgccagctggagaaacacatcgccctgcagaagatcaac
acacgtctgggtcagggcgtcccggtggtctgcctgatcctggaggggggtccgaacgtg
atctccatcgtgttggagagtctgaaggaggagcctccggttccggtggtggtctgtgac
ggcagcggcagagcctctgacatcatctccttcgcccacagatactgtgaggaggacggg
ttggtgagcgacaacgtcaaagatcagctgatcgtcaccatccagaaaaccttcaactac
acccgcagccaggcgctgcacctcttcctgctgctgatggagtgcatgaagaagaaagct
ctggtatcaatcaatcaatcaatctctgtcagcagtttgaccctcgaccgtcctaaaagc
ccggcagcccagaggtcagcagcagcaggaggaggaggaggaggaggaggaggtaaaggc
aaagccagggggaagaaaggaaaaggagccaaaaccaaacctgaaccaccagaggagacc
gaccccaggaaactggagctgctcaactgggtgaactctctggagcaggccatgatggac
gctctggtgttggacagagtcgactttgtgaagctgctgattgagaacggcgtcaacatc
catcacttcctgaccatcccccgcctggaggagctctacaacacgaagttgggaccggcc
aacacgctgcacttcgtggtcagagatgtgaaaaaggggaatcttcctccagattaccag
atcacactgatcgacatcgggctggtgctggagctgctgatggggggggcttaccgctgc
aaatacaccaggaagagcttcagggcgctgtacaacaacctgtatggactgaagaggcct
aaagctttgaaacttcttggaatggaggatgatgagcctcgtccgaaaggaaaagggaag
aagaacaagaagaaagaggaggaggaggacattgatgtggacgaccccgaggtctgccgg
tttcagtacccgttccacgagctgatggtgtgggccgtgctgatgaaacgccagaagatg
gcgctgttcctgtggcagcggggggaggaggccatggccaaagctctggtggcctgtaaa
ctctacagggccatggcacacgagtcatcccagagcgagctggtggacgacatctaccag
gacctggagaacaactccaaggagttcggtcagctggcctacgagctgctggaccagtcg
tacaaacatgatgagcaggtggccatgaagctgctcacctatgaactgaagaactggagc
aactccacctgtctgaagctggcggtggctgccaaacacagagacttcatcgctcacacc
tgtagccagatgctgctgaccgacatgtggatgggctgcctgaggatgggcaagagcaac
agtctgaaggtgattttaggaatcattttccctcctaccatcctcctgctggagtttcgt
cttggagatgaatcttcgtttcactcctccaaacaaaacgaagacagcaaaattaaagac
aacgacaacaaatccaacaaggactccgtctctaacgtcgacacaacgtctaagaaagga
gacgaagaagagaaccagaagaaacacaggaagagggttcccatcgggaaaaagatctat
gaattctacaacgctcccttcaccaagttctggttcaacacgatcgcctacctggtgtac
ctgagtttgtataattacatcatcctggtgaagatggagcgatggccgtctctacaggag
tggatcgtcatctcttacatcatcactctgggactggagaaagctcgacagatcttgatg
tcggagccggggaagctgaagcagaaggtgaacgtgtggttggaggattactggaacatc
acagacctggtggccatctgtgtgttcctgctggggctgctgctgcggctgcagagcgag
ccgtacatgggctacggacgcgtcatctactgcgtcgacatcatcttctggtacatccga
gtgctcgacatcttcggggtcaacaagtacctgggaccctacgtcatgatgatcggcaag
atgatgatcgacatgctgtacttcgtggtcatcatgctggtggtgctgatgagcttcggc
gtggcgcggcaggccatcctccaccctgacgagaagccaacgtggcgtctggctagaaac
atcttctacatgccgtactggatgatctacggagaggtgtttgcagactccatagaccgt
aagactagagttcatatttacgccatggagatcaatcctccgtgtggagacaacatgtat
gacgaggacggtaagaagctccctccgtgtattcccggcgcctggctgactccggccatc
atggcttgttacctgctggttgcgaacatcctgctggtcaacctgctgatcgccgtcttc
aataacacgttcttcgaggtgaagtccatctccaaccaggtttggaagtttcagcgctat
cagctgatcatgaccttccacgaccggcccatcctgcccccccccctcatcatcttcccc
cacatctacatcgtcctcaagaggctctgctgccgttgccgccggcgaccggagggcgac
cacgacgaccgcgagaggagactgcagctggtgctgagcagtgaggagctgaagagtctt
catgagtttgaggaacagtgtgtggacgaatacttccgagagaaagacgacgagaaacaa
tcgtccaataacgagaggatccgagtgacgacagagagggtggagaacatgtccatgcgt
ctggaggaggtgaatgagagagagcattctatgaaagcttccctgcagacagtagacctg
cgcctggctcagctggaggagttcagcagcaggatggtgaacgctgtggagaagctcgcc
ggcatcgagttggtccgctctcgctctagaggatcatcggtgtgtgagccggccgctctg
ctcagacacgccagcatcaacagcgccgacggctacagcctgtaccgctaccagctggac
cacgaggaccgggtctctgtgtgcggagacagcgaggacagaagagtccacctgagtcca
gaaagacgaggagggaacacagaggggacgacaggtaggagacaggaactgttcggctcg
accctggaggtcaaaggtcagagggagcgctctctgtctaacgttgacatcctgatctca
ccctgcgacccggcgcagagaccagagtctgtcgccatggagaccggagaggagacacca
gggaccctccctctggagaggtcaaaggtcacgctgccctccagccccgagggggaggag
gaggaggacaggaagtacccccccctctttgggggggaggaggaggaggacaggaagtac
ccccccctccgctccaagagcctcaacacaaacccaaggaagaccaggacccccagaccc
accggcagcgtctcagacctggtctctgctttcagtgggggggccggccgggacctggac
cagaaccagaaccagaaactgtga
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