Scomber scombrus (Atlantic mackerel): 133999858
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Entry
133999858 CDS
T10651
Name
(RefSeq) ATP-dependent RNA helicase DHX58-like
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133999858
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
133999858
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133999858
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
133999858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
133999858
NCBI-ProteinID:
XP_062295172
LinkDB
All DBs
Position
18:complement(8559905..8564304)
Genome browser
AA seq
680 aa
AA seq
DB search
MADFALYSYQKEVVERALRRENIIIWLPTGGGKTRAAVYVASQHLKTTSQAKVVVLVNKV
HLVEQHFHKELKPHLGHEYKMEAVSGDSGQKDFFGKVVERSDVVICTAQILFNALTNMEE
TKHVELSDITLLIIDECHHTHKENVYNKIMRHYLEKKLRGERKLPQILGLTASPGTGGAK
NLERAVEHVLQICANLDSAIVSTKDCTAELKEKVPRPFKSMDIVDKRPQDPFGDHLKSMM
QKIHDFMTLPPDFRLRESGTQEYEQDVMILEQRGVEEQNRILAQCALHLREYNDALLIND
TLRMIDAYRSLEDFYDIKADNAIDETDDFLVGLFQENQVELREIANNSQHENPKMGKLET
VLLKQFGPDVESRGILFCKTRKSTHCLNDWVLYNRALQQAGIKAAVLTGAGGGISHMTQN
EQTDTIRKFRQGVLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQARGRARAPEAE
YSMVGQTGGQEVRREGINELLEELTGRAIAKVQEMSIHDFSTKINELQKEALIGSEVAEM
HKKEKRGRFAASRVQLLCRNCFKSVASGSDMKLIENTLYVNVNPDFQKHYKLGEQVIKDK
TFDDWEPGRSISCNDCNKDWGFEIKYRKIALLPTIAIKNFGLETPEGRKTVKKWKDVSFT
VEEFDFQEYIQDNFPDMTID
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttgcactttactcataccagaaagaagtggttgaaagggcccttcgaaga
gagaacatcattatctggctgccaacaggaggggggaagacccgtgctgctgtgtatgtg
gcaagccaacacctaaagactacctcacaggctaaagtggtggtcctggtaaacaaggtt
cacctcgtggagcaacatttccacaaagagctcaaacctcacctgggccatgaatacaag
atggaggcagtcagtggagacagtggacagaaggacttctttggaaaagtggtggaaaga
tcagatgtggtcatctgcactgcacagatcttatttaatgcgctgactaacatggaggaa
accaaacatgttgagctctcagacattactctactcattattgatgagtgccaccacacc
cacaaagagaatgtctacaacaagataatgagacactatttggagaaaaagttgagagga
gaacgaaaactgccacagatcctgggtctcactgcatcaccggggacagggggtgcaaag
aatctggaaagggctgtagagcatgtactgcagatttgtgccaacctggactcagccata
gtttcaactaaagactgcactgccgagctgaaggagaaggtacccagaccctttaagtca
atggatattgtggacaaaaggcctcaggatccatttggggatcatctgaagagtatgatg
cagaagatccatgatttcatgaccctgcctccagacttcagactgagagagtctggcaca
caagaatatgagcaagatgtgatgatactagagcagagaggggtagaagagcaaaacaga
attctggcacaatgtgcactccatctcagggagtacaatgacgccctgctcatcaatgac
accctgcgaatgatagatgcttatcgctccttagaggatttctatgatatcaaggccgac
aatgccatagatgagacagacgacttcctggtaggacttttccaagagaatcaagtggag
ctgagggaaatagcaaacaattctcagcatgagaaccccaagatgggcaaacttgaaacc
gttcttctaaagcagtttggtccagatgtggaatcaagggggatccttttctgtaaaact
cgtaaaagcacccactgcctgaatgactgggtcctctacaatagagccttgcagcaagct
ggcataaaggcagcagtcctcacaggggctggaggtggcataagtcacatgacacagaat
gagcagacagacacaatccgcaaatttcgccagggtgttctcaacctcctgatctccacc
agtgtggctgaagaaggccttgacatacctgaatgcaacctggtggtacgctatggactg
cttacaaatgagattgcccagcagcaggccagaggacgtgcccgagcaccagaagctgag
tattcaatggtcggtcagacagggggacaagaagtgcgtagagagggcatcaatgaactt
ttggaagagctgactggacgagccattgctaaagtccaagaaatgagcatccatgatttt
agcacaaagataaatgagcttcagaaagaggcacttattggcagtgaagttgcagagatg
cacaaaaaggagaagaggggtcgcttcgctgcctccagagtccaacttttgtgtcgaaac
tgtttcaagtctgtggcctctggaagtgacatgaaacttattgaaaatacactctatgtc
aatgtgaaccctgactttcagaagcactacaaacttggtgagcaggttattaaagacaag
acttttgatgactgggagcctggacgctcaatcagttgcaatgactgcaacaaggactgg
ggatttgagataaaatacaggaagatcgccctgcttcccacaatagccatcaagaacttt
ggcctggagacccctgagggcaggaagactgtgaagaagtggaaggatgttagtttcact
gttgaagagtttgactttcaagaatacatccaagacaacttccctgacatgaccattgat
tga
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