Scomber scombrus (Atlantic mackerel): 133999946
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Entry
133999946 CDS
T10651
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133999946
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
133999946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
133999946
NCBI-ProteinID:
XP_062295279
LinkDB
All DBs
Position
18:complement(15535040..15544314)
Genome browser
AA seq
2260 aa
AA seq
DB search
MQSFRERSGGYHSNQPCYQQEPHELSRLETYRQHPHHPHPQHPHPGPGPHSGPGPGHTRP
GYEAHSLANPTSMPPAGGTGGGPKDCYSQQAFPGYPGSGGGNGSGNGSSAPSQAKKPYRG
SKVPPPNHSQHLQGPGGYSNHMGPGNYSAQYMSEGHLQQKWEDPAQLAQYEQEMVGRMEA
SGTPAPGSSQYMDQNMLGHSQTQCHQPSTPSYTSPHHQPHPPNPAPSPLMYPQSHLHYPQ
HSPSPSPYMEKCSPMPHCYKGYNMTPSSQYSRQMSSHSNLKQGSYRSTQNSYGYQQPPSR
AYEQQPPLQTMTNPQEPHPKYQHYSQPQQNYCLSELSVRSPEQYYQTCSPSSSHSPARSV
GRSPSYSSTPSPLMTNPESFQYGQPPMTPGAASSSSSSSAGMQDQGSSNTMLMPPRSHPS
PNVPHAASHSYSTTTQVPTMKERFSEKLLSNPSLWSLNALTSQVENISNNVQQLLLSEAL
VANKKAGKRSSGGSNSSTGSGASSKKGEEYKSPSYPDGAGSVGGGPMQDPYSTPQHQPIP
MELHEGGYSSSSDEQLERGYYYCGQGRSPAQAPNNTHLSLDTASSCSMTSPDDMSTRSGD
SGLHNLTPDPIRCQSGQGGDGMSTPVKSIGDERSPTSITIPSPMKQERDSPSNIQHINEP
VKENFEESAWSEKSTDKEEVSTEKNPDCDGDLDSTKSTEKQEKWSDDEKCPTLYSKVNKE
VKEKNYCYEQTVYQGVQSKYDPDARDSVEQSPAALSDYSHKEHFGQEIKSDAFKSESPTA
SESSVKTLPFISRGDLEQDQYSTEKEDSSENTSPTPQVEALDDNNSDKKEIRDEGEEEEG
EEEGEGEEEAVEEEEHCLSPPLSAEVREELGEGEKVSQSSTEEHMNNRDGPEKPSGDVCS
RTDSQSTELHIDNEFAGAPAHPNAVAATAAADASARESAIGDTAPQPQSAMPVFSALNDK
ATPPIQARDHIDHSDAKVLEPDSPQLPGKSILPSAPSWADTPPSPKKGDEDMEPGISCSS
AVTPLAKPEPVAPSAQPRAFGRKHARGRRRLMHSGVGIRRQLSLEREGEKEEEGAPSPTQ
KPCMPPSKTVLFSDQMDLAHQESIVSQTPKMLTDGFRSRMCTRSFNAADLPPKIEPHVKR
KPGPKPGSKPGPKPGPKPGPKPRPKPGGKPGPKPGPKPGLKPGPKPGPKPGPKPGPKPVP
NTPELPLKIETPVKRKPGPKPGSKPGPKSGSKPGPKPVVKPGPKPGPKPGPKPADALPPT
DTIPIKAPVGRPKGSISKAKLVQQEEIIQPLTGLQGRSRKSIKSTVSQVNQDVKSVNQEE
KQANHEGKAPEKEGKNMVLRSRKPSQEKLLKEKEKIIEEDVLSPPLTHTEIKPSYEEDEE
PVTVEQTLTPIPNVVKNIDVPADPPAPLAPTEQTEEKTLLPLKRKPSPEPSTRPVKKKRG
PKPKPKPLPPQLPLLEQVVSTPKEKGARGTKRKRGPPKKTSEITPPPKHTPSNISEADIT
SDVPVVPPQCPTKTKVLPPRKGRGQKYEAMVQKITSPSSKKHLPTPQIESSPNDDVTTKA
LSQHALKESEMSVLVNSTETIEGEVKSTESRQEGGKQHEGAVRKEEVKQEREKYEVSQKA
LTPEEVRQGLVEEVVNKDATTQENIKPGTQQDVGSDTVQRSMEALVEVRTPGEWTQQAAA
GLSTVATKCARTKRKRWAMVESTDASVVALEAGSLIVTTPRLAKQRAIKNNHEMHLKQRR
KKRKGQAPLEETEAIKETNTETAEQQQEKVEEMITPTEPTVPLPISIDDITEAPQVTSTE
LIQKSRRGRKPSSNPTKRKQGKGSLEQIPGKPVKVHKKPGPKPGMKDALEVIEAVVRAAG
CEQAEKEEREREERESENKETQNTCVVGPVVTITEKRTEMISVKRIRRRPVQQNSKLSFC
PYVRINNSRDFSSWCAIVNRPEDAVIFQRRRKKGILRMKNPFTVAKVMPHAAAMLQGPLV
NKNLIDRCLTCSLCGKPSNYRDLGDLCGPYYTEDCVPRKILTIEHTESLKEVPEKTNDNN
SCSSEEPGSSSKNESVDSIEKDGNSEVTTQEASSSRHHHWRYRRAERTERMGREGGLRRL
TLRDRFRKMKQLRAINTGASSEQEGSGSMFQRLQVEAEAKEHWAHENCAIWTKGVIMVAG
RLYGLKEAANISAQASCYKCQIVGASLSCCWRGCSHKYHYVCAKEIGCTFHEDDFSIKCP
RHESSSPHPSSSLPLSFSLISSLLFSPPLLTLTPTSKQQK
NT seq
6783 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccttccgtgagcgcagcggtggttaccacagcaaccaaccctgctaccagcag
gagccccatgaattatcccgcctggagacctaccgacaacacccgcatcatccccacccc
cagcacccgcatccaggccctggtccacattcaggcccaggcccagggcacaccaggcca
ggctatgaggcccactctctggcaaaccccacaagcatgcctccagctgggggaactgga
ggaggacccaaggactgttacagccagcaagcgttccctggttacccaggcagtggtgga
gggaatgggagtggaaatgggagctcagcaccctcgcaggcaaagaaaccctacagagga
agcaaagtgcccccaccaaaccacagtcagcacctccaaggtcctgggggttatagtaac
cacatgggccctgggaattattcagcccagtatatgagcgagggccacctccagcagaag
tgggaggatccagcccagttagcacagtatgagcaggagatggtggggcgtatggaggct
agtggtacccctgcacctggctcctcacagtacatggaccagaacatgctgggccactcc
caaacccagtgccaccagccctctaccccttcctataccagcccccaccaccagccccac
cctcctaaccctgccccttccccactcatgtatcctcagagtcacctgcactacccccag
cattcaccctctccttcgccatacatggaaaagtgcagccctatgccccactgttataaa
ggttacaacatgacccctagttcccagtatagcagacaaatgagcagccacagcaacctg
aagcaagggagttacaggtcgacccagaacagttatggctaccagcagcctccctccaga
gcttatgagcagcaaccccctttacagaccatgactaacccccaggagccccaccctaaa
taccaacactacagccaaccccaacaaaactactgtctctcagagctgtctgtcagatca
ccagaacagtattatcaaacttgtagcccctcctcaagccactcccctgcacgctctgta
gggcgctccccatcatacagctcaaccccttcaccattaatgaccaatccagagtcattc
cagtatggccaacctccaatgactcctggggctgcctcctcttcatcatcttcttcagct
ggcatgcaggaccaaggcagttccaacaccatgctgatgccgccacgctcacatccctca
cccaatgtgccccatgcagcctcccacagctactcaacaacaacacaggtacccaccatg
aaagaacgtttctcagagaagctgctgtcaaaccctagcctgtggagcctaaatgccctc
acctctcaggtagagaacatctccaataatgtccagcagctgctgctttcagaggccctg
gtggccaacaagaaagctggcaaacgcagcagtggagggagcaacagcagtactggaagt
ggagcatcttccaaaaagggtgaggagtacaaaagtccttcatatccagatggtgctggt
agtgttggtggaggccccatgcaggacccttactccaccccacagcaccagccaataccc
atggaactccatgagggaggttattccagcagcagtgatgaacagctggagaggggctac
tactactgtggccaaggcaggagtccagcacaggcccctaacaatacacacctcagcctg
gacacagcctcttcatgctctatgacatctccagatgatatgtccaccaggtctggggac
tcaggtcttcacaaccttacccctgaccctattagatgtcagtcagggcaaggaggagat
ggaatgagtactccagtgaagagcattggtgacgagaggtctcctacaagcataacaatc
cccagtcctatgaaacaagaaagggattccccttcaaatatacagcatataaatgagcct
gtcaaagagaactttgaagaatcagcctggtcggagaaatcaactgacaaagaggaggtg
tcaacagaaaaaaatcctgactgtgatggagatttagactcaactaaatctacagaaaag
caggagaaatggtcagatgatgagaaatgtccaactctctacagcaaagtaaataaagag
gtgaaagaaaaaaactattgctatgagcagactgtgtaccaaggggtccaaagcaaatat
gacccagatgcaagagactcagttgaacagtctccagcagctctctctgactacagccac
aaggaacactttggccaagagattaaatcagacgcattcaaatcagagtctccaactgct
tctgaaagctcagtgaaaacactgcctttcatttctaggggtgaccttgaacaggatcaa
tattccacagagaaggaggacagctcagagaacacctcaccaaccccccaagttgaggcc
ttggatgacaacaactcagataaaaaagagatcagagatgagggtgaagaagaggagggg
gaagaggagggggaaggagaggaggaggctgttgaagaggaagaacattgtctttcccct
cctctgtcggcagaggttcgggaggaactgggggagggggagaaagtgagccagtcatcg
actgaggagcacatgaataatagagatgggccagagaagccttctggagatgtctgcagc
cggacagacagtcagagtactgagctccatattgacaatgagtttgcaggagcacctgcc
catccaaatgcagtagcagcaacagcagcagcagacgcttctgcaagggaatcagccatt
ggtgacactgctcctcagcctcagtctgctatgccagtgttctcagccctcaatgacaag
gcaacacctccaattcaggcaagggatcatattgatcacagtgatgctaaagtgctagag
ccagactctcctcaactgccagggaagtcgatactcccctcagccccctcctgggcagac
actccaccctccccaaagaaaggtgatgaggacatggagccgggcatcagctgctcaagt
gctgtgacccccttggccaagccagagcctgtggccccatctgctcagccaagggcattt
ggacgtaagcatgccaggggcagaaggagactcatgcattcaggtgtgggaatcaggcga
caactaagcttggaaagggagggggaaaaggaagaggaaggagccccctcccctacacag
aaaccctgcatgcctccaagcaaaactgtgctattctcagatcaaatggacctagctcat
caggaatctattgtgagccagactcccaaaatgctaactgatggttttcgttcaagaatg
tgcactcgctcattcaatgcagcagacttaccacccaaaattgagccccatgtgaagaga
aaaccaggcccaaaaccaggttcaaagcctgggcccaaaccagggccaaaacctggacca
aaaccacggccaaaaccaggagggaagccagggccaaaaccagggcctaaaccaggccta
aagcctgggccaaagccagggccaaaacctggaccaaagccaggaccaaaacctgtgcca
aatacacctgaactgccactgaagattgagactccagtgaaacgaaaaccaggaccgaaa
ccaggttcaaaacccgggccaaaatctggatcaaaacctggtccaaaaccagttgtaaag
ccaggtccaaaaccaggacctaagcctggaccaaagccagcagatgctttgccccccact
gacactatacccatcaaggccccagtgggtcgtcccaaaggctcaatttccaaagcaaag
ctggtacaacaggaagaaataattcagcctttgacaggactgcaaggcaggagcaggaag
agtataaagtctacagtatcacaagtaaaccaggatgtaaaatcagtaaaccaggaggaa
aaacaagcaaatcatgaggggaaagcaccagagaaagaaggtaaaaacatggtcttaaga
tccaggaaaccctcacaggaaaaactgttaaaagaaaaagaaaagatcatagaggaagat
gttttatccccaccactcacacacacagaaattaaacctagctatgaggaagatgaggag
cctgtaactgtggaacaaactctaacgccgattcctaatgtagtcaaaaacatagatgtt
ccagcagatccacccgcaccacttgccccaactgaacaaactgaagaaaagacattactt
ccactaaaacgaaaacctagcccagaaccttctacaaggccagtaaagaaaaagaggggt
ccaaagcccaaaccaaaacccttaccacctcaactccccctgctggaacaggtggtctcc
acacctaaagagaagggagcccggggcaccaaaagaaagcgagggccacccaagaaaaca
tcggagatcactcccccacccaaacacactccctccaacatcagtgaagctgacatcact
agtgatgtgcctgtagtgcctcctcaatgccccactaaaacaaaagttctcccaccacgc
aaaggcagaggacagaaatatgaggccatggtgcagaaaattacatctcctagctcgaag
aaacaccttccaactccccagatagagagcagtccaaatgatgatgtaacaaccaaggct
ttgtctcaacatgccttaaaggaaagtgagatgtctgttctggtaaatagcactgagacg
atagagggagaggtaaaaagcacagagtcaagacaagaaggagggaaacaacatgaaggg
gcagtgagaaaagaggaggtgaaacaagagagagaaaagtatgaggtgagtcaaaaggca
ttaacgccagaggaggtgagacaagggttggtagaagaggttgtaaataaggatgcgaca
acacaggaaaatattaaaccagggacacagcaggatgttggatctgacacggttcagaga
tcaatggaggccctggtagaagtcaggacaccaggagagtggacacaacaggctgcagca
ggtttatctactgttgccactaaatgcgccagaactaaaaggaagcgatgggccatggtg
gagagtacagatgcttcagtcgtagccttggaagctgggagcctaatagttacgacacca
aggctagccaagcagagggccattaaaaacaaccatgagatgcacctaaaacagaggagg
aagaagagaaaaggacaagcccctctagaagaaacagaggcaatcaaggagacaaatact
gaaactgcagagcaacaacaggagaaggtagaagagatgataacccccacagagcctaca
gtacccctgccaatcagcatagatgatatcacagaagccccccaggttaccagcacagag
ctcatccagaaatctaggagaggcagaaaaccatcatcaaatccaactaagaggaaacaa
ggcaaaggctcattagagcagattcctggcaagccagtgaaggtccacaaaaagcctggg
ccaaaacccggaatgaaggacgcccttgaggttatagaggcagtagtaagggctgcagga
tgtgaacaggccgaaaaagaggagagagaaagagaagaaagggaaagcgaaaataaggaa
acacagaacacatgtgttgtgggtcctgtagttacaataacagaaaaacggactgagatg
atttctgtgaaaagaatcagacgcaggccagtccaacaaaattctaaactgtctttctgt
ccatatgtgcggattaacaactctagagacttttcctcttggtgtgccatagtaaacagg
cctgaggatgcagtaatatttcaaagacggagaaaaaagggcattcttagaatgaagaat
cctttcacagttgcaaaggtaatgccacatgccgctgctatgctacagggacctttggtg
aataaaaatctaattgacaggtgtcttacatgttccctgtgtggaaagccatcaaattac
agagacctaggtgatttgtgtggaccctactacacagaagattgtgttccacggaagatt
ttgacaattgagcacacagaatccctcaaggaggtcccagagaagacaaatgataacaac
agttgcagcagtgaagaaccaggcagctcctcaaagaatgagagtgtggacagcatagaa
aaggatggcaactcagaggtaaccactcaagaggctagtagtagtaggcaccatcattgg
agataccgacgggcagaaagaacagaaagaatgggtcgggagggtggtctgcgaagatta
actctcagagacaggttcaggaagatgaagcagctccgggccattaatacaggggcttca
agtgaacaagagggcagtggcagcatgttccaaaggctacaagtggaggcagaagctaag
gagcactgggcccatgaaaactgtgccatctggaccaagggggtaattatggtagctggg
aggctatatggactgaaggaagctgccaacatctcagcccaagcgagctgctacaagtgc
cagattgtaggggcgtccctcagctgctgttggagaggctgctctcataaataccactat
gtctgcgccaaagagataggctgcacattccatgaggatgacttctccatcaaatgtccc
agacacgagtcgtcctcccctcatccctcctcatctcttcctctctctttctctctcatc
tcctctctactcttctccccgcctctcctcaccttaactcccacgtctaagcagcagaaa
tag
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