Scomber scombrus (Atlantic mackerel): 134000016
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Entry
134000016 CDS
T10651
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssco01001
]
134000016 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
134000016 (ciita)
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134000016 (ciita)
Protein kinases [BR:
ssco01001
]
Serine/threonine kinases: Other
TAF1 family
134000016 (ciita)
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134000016 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
nSTAND_NTPase5
nSTAND3
TAF2_3rd
Motif
Other DBs
NCBI-GeneID:
134000016
NCBI-ProteinID:
XP_062295310
LinkDB
All DBs
Position
18:19079678..19098987
Genome browser
AA seq
1583 aa
AA seq
DB search
MAQFEEVLGGVRLALTWASLAEIKAMLEGLVEEQIISEAYRKSLSLHRFIEGIAPETIHS
QSTCKAGSDKLEIHSQESTAHWQQDQWGQVRKYGLSTSRESAITIHDQLRSEDEHNSTWS
KPNLHPLYGSVSQGHNPKLIQELSHWMSSRGPVMDEHYTSHRIVRVSDNERVDESNSEDE
KEWLEQVEEAARRIAVPLWQHWDRGERMLLPLLPCVTAVCSASAKRASDAPCPVSDMEDQ
TELAVACQMLDLYTDSMEVKITNTSLTLDTEGATYSLKGHCFSMYDNVAATELNTDHFNI
CETTDTALNASPVEARAADEYENEDKERLDSHWDTKMQEEEQNLPPYSDLEDLQVTEMHE
VEQDLPPDPNFGDLPDLSEFLNDDYLRKFMEQEDTEILFGDPWLNGVDVNNNNNNCDIIT
TTALPSAESHQQEQQHNVTSKTNHRSKRPRAPRSQPCTEGNMPTRAKRQRAAGRAKTKKA
QTEPAVTQGSDMGSEPIPAETAGLSTSPPRILQFHSPIQFITIPDTPGYQVVQTLSLSPP
VILPLPNTAAAPTYIFVPAPSPPRNLQVPPLSPVDGAVAPVQMSSSPPGSLSDTASKAMS
PLCASPLSPSNETSPCKESPVPQSPTVLDIPQSVKDYIQKAKVHMSQACQDMEAGLNLTS
HYVDVEVIQREILRSGKNTNKCLDKELVIMGDTDRQKSLLGQSQIFESSNGDKPKRYILL
FSNAGMGKTTLIKKLCLDWSRDCIPQFDFVFLLDGKALTITEPTYSLQTLLLNLSSFAPS
CIDSQAVYAQILAAPKRVLIIFDGFEQLRDYEILLQTQEKDLFSSLQKDSKAQTYTVRQL
YAAILQRALLQGSTLLLSTRPRGTASQLLRRADSLLEMSGFTPTYVESYLSKYFTDPALR
ASALDCLQNSSYLHLLCWNPGLCRLVCLVLEQSKSSGTLPRTLTGLCHQVLRLKMERDCS
NTNSQAEAQAQISIQCVEETQTHVSSSTDVKRRSKNTQRKSRTQVHTRSRTQRARRAKAK
EKEADDLEAEEMKSGGGEIQSTEDKELLSQVSSLAWDGVKANSSVIPAGRTISAKLKAFG
LKTGLFLSHHLRTTQFYLSGETDGAERKDGKEIEGGRKGERRVNRGSTDVENSENILLWA
NPFLQSYLAGVHLSLSRTVSDRSFLQTLPFQSGPKGRRRPQREELELTLRFAVGLLFHNR
TELQRLHLYTETTFRDMVVSKQGLVTKHIEELSHVDMSPAQILEACHYVYEASFTHDNNS
RDSGGTRLATHLAANLPEVLTFHGVSLSPLDTFAVQKILERGGTEGRSFCLDLEDSGIQI
SGLRALVGLSDINTYRACIADVITLWGELKQSGEEVLLQQVVSKFKIHPLKATQVCHIDH
LAKLVNIHVNRRLSDSSSQSDSILAEGVPAVKELHKLEFALGPESGPLALPKLWELLPGL
NNLQHLDLEKSKIDDKGAEKLAEALVSLCSLEILNLSQNCIGDEGVKKLTATLRDLPKMH
HLSLYSNVISDEGAESLAAALPHMASLTELDVAYNKLTDVGAQSLGASLRNCKRIKILRL
WNQCIPYGVFERLQQQDQRIAWH
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atggcccagttcgaggaggttcttggcggagtgcggctggctctgacctgggcctctctt
gctgagatcaaggctatgctggagggtttagtggaggagcagatcatctcagaggcctac
agaaaaagcttaagtcttcaccgatttattgaggggattgcacctgagaccattcacagc
caatcaacatgtaaagctggatctgacaagctggaaattcattctcaagaatccaccgct
cactggcaacaagatcaatggggtcaggtgaggaaatacgggttatcaacgtcaagagaa
tctgccatcactatccacgaccagttgagatcagaggatgaacataacagtacatggtcc
aagccaaaccttcatccactctatggttctgtgagccaaggacataaccctaaactgata
caggagttgagccattggatgtcatcaagagggccagtgatggacgaacactacaccagt
cacaggattgtacgtgtaagtgataatgaaagagtagatgagtcgaattcggaggatgag
aaggagtggttggagcaggtagaggaggcagccaggcgaatagcagtgcctctgtggcag
cactgggaccgaggagagagaatgttactccccctactcccatgtgtgactgctgtatgt
tcagcaagtgcaaaaagagcgagtgatgcaccatgtcctgtttctgatatggaagatcaa
acagagcttgcagtcgcctgccagatgctagacttgtatactgacagtatggaggtcaag
attacaaacacaagcttgacattggatacagagggagccacctactcattaaaaggccac
tgtttctcaatgtatgacaatgtagcggcaactgaattgaacacggatcatttcaatatt
tgtgaaacaactgacacagcattaaatgcatcacctgttgaggcccgtgcagcagacgaa
tatgaaaatgaggataaggagaggttggattcacactgggataccaagatgcaggaagag
gaacagaatctgcctccctattctgacttggaagatctacaagttaccgagatgcatgaa
gtggaacaggacctgcctcccgatcctaactttggagatctaccagatttatctgaattc
ctcaatgatgattacctgcgaaagtttatggaacaggaagacacagaaatcctctttggt
gatccatggttgaatggtgtggacgtcaacaacaacaacaacaactgtgatattatcaca
acaacagcattacccagcgcagagagccaccagcaggaacagcagcacaatgtaacaagc
aaaacaaatcacaggagtaaaagaccaagagctccccggtcacaaccttgcactgaaggc
aacatgccaaccagagctaaaaggcaacgagcagcaggtcgagcaaagactaaaaaggca
cagactgagccagctgtcactcagggtagtgacatgggatcagagccaattccagcagag
acagcaggcctctccacatctccaccgagaatccttcaattccattctcccatccagttt
atcaccatcccagacaccccaggatatcaggttgttcagacactgagtctctctcctccg
gttattcttccactcccaaatacagctgctgcacccacatacatatttgtgcctgctccc
tcaccaccccgcaacctccaagtgccacccctctcccctgtggacggtgcagtagcacca
gttcaaatgagttcatccccacctggatctttgtcagatactgctagcaaagctatgtct
cccctttgtgcttcaccactctcccccagtaatgagacatccccctgtaaagaatcacct
gttcctcagtctcccaccgtccttgacattccacagagtgtcaaggactacattcagaag
gccaaagtccacatgagtcaagcctgtcaggatatggaggcaggtttgaacctgacatct
cattacgtagatgtggaagtgatccagagagagattcttcgttctggaaaaaacacaaac
aaatgcctggacaaagaattagtcatcatgggagacacagaccgacaaaaaagcttgttg
gggcagagtcagatctttgagagctcaaatggagacaaacccaaacgctacatattgcta
ttcagcaatgcaggcatgggaaaaaccaccctgatcaagaagctgtgtcttgactggtcc
agagactgcatccctcagtttgactttgtcttcttattggatggcaaagcactcaccata
acagagccgacctatagccttcaaaccctcctgctcaacctctcctcctttgccccttcc
tgtattgactcccaagcagtgtatgctcaaatcctcgcagctcctaagcgtgtgctcatc
atttttgatgggtttgaacaattgcgggactatgaaattctactccagactcaagaaaaa
gatttattctcatcattgcagaaagacagtaaagcgcagacatacacagtgagacagcta
tacgcagccatccttcagagggccctcctacagggcagcacgctattgctctctacccga
ccaagaggcactgccagccagctactgcggcgggcggacagccttttggagatgagtggt
ttcacccccacgtatgtcgagagttatttgtcaaagtactttactgatcctgccctcagg
gcatctgctttggactgcttacaaaactccagctatctacatctcctctgctggaaccct
gggctatgtcggctggtgtgcttggttttagagcagtccaaaagttcagggactctaccg
agaactttaactgggctctgccatcaagtgcttcgcctaaaaatggaaagggactgtagt
aacacaaactcacaggctgaggctcaagcacaaatatccattcaatgtgtagaagaaacc
cagacacatgtctctagtagcactgatgtgaagagaagatccaaaaatactcagagaaag
tcccgaacacaggtgcacactcgttctcgaacccaaagagcaaggagggcaaaagcaaag
gagaaagaggcagatgatttggaggcagaggagatgaagagtggtggaggtgaaatacag
agcacagaggacaaagagttgctgtcccaggtgagctctttggcctgggatggggtcaaa
gccaactcttctgtcattcccgcaggacggaccatatccgccaaactcaaggcttttggc
ctcaagacagggctattcctctctcaccacctgaggacgacacagttttacttaagtggt
gagacggatggagcagaaagaaaggacggaaaagaaatagaaggaggaaggaaaggagaa
agaagggtgaaccgaggaagcacagatgtggaaaacagtgaaaacatacttctgtgggcc
aaccccttccttcagagttacctggcaggggtccatctgtctctgtcaagaactgtatca
gaccgttccttcctacagaccctccctttccagtcaggcccaaaggggcgtcggcgaccc
caaagagaggagctggagctaacattgagatttgcagttggtctcctctttcacaatcgg
acagagctgcagaggcttcacttgtacacagagacaaccttcagagacatggtggtcagc
aagcagggtttagtaaccaaacacattgaggaactttcccatgttgacatgagccccgca
cagattctggaggcatgtcactatgtttatgaggcaagtttcacacatgataacaatagc
agagacagtggtggcacacgattggccactcacctggcagcgaaccttccagaggtcctg
acattccacggagtttcactcagcccactggacacgttcgctgtgcagaagattcttgaa
aggggtggaactgaaggtagaagtttctgtttggatctcgaggactctgggatacagatc
tctggactcagggccctggtggggctcagcgacatcaacacatacagggcgtgcattgcc
gatgtcatcaccctatggggagaactaaagcagagtggtgaagaggtgctcctacaacag
gtggtctccaagttcaagatccaccctctgaaagccacgcaggtctgtcacatagatcac
ctggccaagctggtgaacatacatgtgaacaggagactgtcagacagctccagccaatca
gattccatcctggcagaaggagtgccagcagtcaaagagctacacaagctggagtttgcg
cttggtccagagagtggccccctggctcttcccaagctgtgggagctcctgccaggttta
aataacctgcagcacttagatttagagaagagcaagatcgacgacaaaggagctgagaag
ttggcagaagctttagtctccctctgctctcttgagatactcaatctgtcacagaattgt
ataggggacgagggggtgaagaaactcacagccacactgagggatctacccaaaatgcac
catttaagtctctacagtaatgtgatttctgatgaaggggcagagagtttggctgctgcc
ctccctcacatggcatctctcactgagctagacgtggcgtataacaagttgacagatgtt
ggtgcacaaagcctgggagccagtctaagaaactgtaaaagaatcaagattttgaggttg
tggaaccagtgtattccatacggagtatttgagagacttcagcagcaggaccagaggatc
gcttggcattag
DBGET
integrated database retrieval system
