Scomber scombrus (Atlantic mackerel): 134000091
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Entry
134000091 CDS
T10651
Symbol
cacna1ha
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
134000091 (cacna1ha)
04020 Calcium signaling pathway
134000091 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
134000091 (cacna1ha)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
134000091 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
134000091
NCBI-ProteinID:
XP_062295383
LinkDB
All DBs
Position
18:18572827..18681722
Genome browser
AA seq
2532 aa
AA seq
DB search
MTDGEGRARFQYAECPEGQEQEEVLEEVRLAIPTAYRNDTPGCDVDPGGSRDQQEEEEVE
RRRKGNREGGEAEWNPEVQEHVEQEPELEVEVGPTLGVRITAPIRDPDCISEEEEQQPYP
ALAPTAFFCLKQTTRPRNWCLRVVCNPWFEHVSMLVILLNCVTLGMFQPCEDVSCQSEWC
RILQVLDDCIFAFFAVEMVIKMVALGIFGPNCYLGDKWNQLDFVIVMAGVMEYSLDGHNA
SLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWA
GLLRNRCFLGEDINTLYNLSISSYYLSEEGEDTPFICSAGRENGMLRCHDVPPYVEGGAE
CSLPASHLSSALIGSVPAVGGASVNGCVNWNQYYNTCRAGDFNPHKGAVNFDNIGYAWIA
IFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQREN
ALMREQRARYMSNDSTLASYSEPGSCYEEMLRYISHLYRKFTRRLQRIYSGWHSKRRKKV
NPNGSGGGSNGGGNGHGHGSSRGGVGAGPGNPLWLRPIHNLLQHHQHQHCRLSNGGQHTP
IVATTESAHGEGDIGGVEELEMKSLPVRRGSTNGNSSGGNPSVVTQGMGALLGRLNGGMN
YPTILPSFVCSYSSKTPPPHSQHCGRSPDRHPPNHPASEHTETLNKLYQLMGQHSRQRLL
YQLAGVVPSPLLLELLSCPMCARSLETLELELGDLEGGRGEADGLHDFPQAGDLRGGRGR
SKRRVVVEYRNGAVRAWVGFREKLKRIVESKYFNRGIMIAILVNTLSMGIEYHEQPEELT
DVLEISNIVFTSMFVLEMGFMLLAFGLFGYIRNPYNIFDSIIVIISVWEIIGQADGGLSV
LRTFRLLRVLKLVRFLPALKRQLVVLIKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFS
LQTDTGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFG
NYVLFNLLVAILVEGFQAEGDANRSESDDEKKSDNFEEDEKVEQLRDTELKMYSLMMTAN
GHVDPRGSMAPPIIMRTAATPMPTPKSSLGPESVLGDELMYREGMSRYGEVGLGFSEAGI
GHVDSRRGSSTSMDPLAYDQRSLGHSSPGRRSPLPPRGSGSSWGSRRSSWNSLGRAPSLK
RRDTSGERESLLSGEGGEEEDSGEDKGEAGGNNRLRPGSLELLQASTLCPSIIAEYGDCN
GRTLNYEPNLNSDPKEDSSPDDDLDDDNSFCYWIKKELRSMKPRWCKEHEEWALYLFSPE
NPFRLWCQRVISHKIFDHVVLVFIFLNCITIALERPEIQSHSTERVFLSVSNYVFTVIFL
AEMTIKVVAHGFCFGKQSYLQSSWNVLDGLLVFVSLVDILVSLAYTGGNRILGILRVLRL
LRTLRPLRVINRAPGLKLVVETLITSLRPIGNIVLICCAFFIVFGILGVQLFKGKFYHCE
GLDTKNITNKSDCLQASYRWRRRKYNFDNLVQALMSLFVLSCKDGWVNIMYDGLDAVGVD
QQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEARLREEKRLKM
IEKKRRSKENEGAEAKQRPYYADYSPLRLTIHTLCTSHYLDLFITFIICINVFTMSIEHY
NQPQYLEEVLKYCNYVFTIIFVIEALLKLLAFGIHRFFKDRWNQLDIAIVALSIMGITLE
ELKMSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNLGLLFMLL
FFIYAALGVELFGKLECNEHNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLR
ECRPEDPHCLSYLPLVSPMYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAE
IAMEMELERQRKLSATSNNSSGGGTYVGPCPHSPGEEEEVQYVDQDLLSSRKMSVSRMHS
LPNDSYMFRPVRPASAPYALEEVDTSPQDQHSGSMTSVHSQPCESYALLQVPDISPVHPR
QLPSLTLPCIAPPTPSPSLRALRRQVAVQVDSVESQSCEQQERPTPVHLPPHSPSPLSPL
STSPFPLPPPPPSSPSALSLPPCSPTAFPLPPPSPSLFPPLLSCHSPLPPLPSSPSLLLP
PPPSPRLPLRPASLRRPRHPSAASLCDPADEEVYHITSSAQHRWGDEEGGGQESRGKAGR
SHSLSPYTSPFSLDYSTSSPPPPPLPPSSSRSALSLLGVGLKDRDFRKGFSVDTQGLLDK
PSSLFAGYPDDQRRHSIEVCLPQAGITSDNQHFLEGVHRSEKSAQAFPVRVQSVGGGHRK
KKMSPPCISIHPPSEREHPKMASPPKLADCSMMLRRRTPSYDLTPHIQSNTHTQDSADTQ
MHRALTPIHVPLQAHSPTHTLTPSRASTPTRTQSYTPXAHIHTDIPISPNIFIQPHAPLV
PTTMPFSQTHSLSPSARHSSLTGDYIPLPQFTFDQPQSRYLSDTDTATCSSPFDSRLGSS
AGFSAKNRRTAQ
NT seq
7599 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagcgcgctttcagtacgcagagtgcccggaggggcaggag
caggaggaggtgctggaggaggtgaggctcgctatacctacagcctaccggaatgacacc
cctggttgtgatgttgaccccggaggaagccgtgaccagcaagaagaagaggaggtggag
aggagaaggaaggggaatagagaaggaggtgaagctgaatggaatcctgaggttcaggag
catgtggagcaggaaccggagctggaagtggaagttggaccaacacttggagttcgcatc
acggctcccatccgtgatcctgactgtatctccgaggaggaggagcagcagccgtacccg
gccctggccccgacggccttcttctgcttaaagcaaacaacaaggcctcgcaactggtgt
ctccgtgtcgtctgtaacccgtggttcgagcatgtgtccatgctggtgatcctgctcaac
tgtgtgactctggggatgttccagccctgtgaagatgtcagctgccagtcagagtggtgt
cgcatcctacaggtattggacgactgtatctttgctttttttgcggtggaaatggtcatc
aagatggtggccctaggaatctttggccccaattgttaccttggtgacaagtggaaccag
cttgacttcgtcatcgtcatggcaggggtgatggagtattctctggatggccacaacgcc
agcctgtcagccatccgtactgtacgagtgctgaggccactgcgggccatcaacagagta
ccaagtatgcggatcttggtgacactgctgttggacaccctgcccatgctggggaatgtc
ctcctcctctgcttttttgtttttttcatcttcggcattgtgggagtccagctgtgggcg
gggctactgcgcaaccgctgtttcctgggagaagacatcaacacattgtacaacttgtcc
atcagttcttactacttgtcagaggagggtgaagacacgccatttatctgctcggcaggc
cgcgagaacgggatgcttcgctgccacgacgtgccaccctacgtcgagggtggggccgag
tgttcattgcctgcttcccacctaagctcagctctgattggatcagttcctgcggtggga
ggggccagtgttaacggctgtgttaactggaaccagtattataacacttgtcgtgcaggg
gacttcaaccctcacaagggagctgtcaactttgacaatattggctacgcttggatagct
atattccaggtcatcacactggaaggatgggtagatatcatgtactatgtcatggatgct
cactccttctacaattttatatattttatactgctcattattgtgggctctttcttcatg
atcaacttgtgcctggtggtcatcgccacccagttctctgagacaaagcaaagggagaat
gctctgatgagggagcaacgtgctcgctacatgtccaacgactccacactcgccagttac
agtgaaccgggctcgtgctacgaggagatgctacgctacatcagtcacctttatcgcaag
ttcacacgcaggctgcagaggatatactccggatggcacagcaaaaggcgtaaaaaggtg
aatccgaatggcagtggcggaggcagcaacggtgggggcaatggacatggccacggctcc
agcagaggcggtgttggcgcaggcccagggaacccattgtggctgagaccaatccataac
cttttgcagcaccatcagcaccagcactgtcgcctcagcaacggggggcagcacacaccg
atcgtggcgaccactgagtccgcgcatggagagggagatatcggaggagtggaggagctg
gaaatgaagtcacttcctgtgaggagaggaagtacaaacggaaatagcagcggcggcaat
ccatctgttgtcacccagggcatgggggcattgctcgggagactgaatggggggatgaac
tacccgaccattctgccatcttttgtgtgcagctatagcagcaagacgccacccccccac
tcccagcactgcgggcgcagtccagatcggcatccgccaaaccacccggcgtccgaacac
acagagacactgaacaagctctaccagctcatgggacagcacagtcgccagaggctgctg
taccagctggcaggcgtggtgcccagccctctgctcttggaactgctcagctgccctatg
tgtgcccgcagcctggaaactctggagctggaactgggagacctggagggaggcagggga
gaggctgacggcctgcatgacttcccccaggcaggagatctgagaggtgggcgaggtcgg
agcaaacggcgagtggttgtggagtataggaacggagcggttcgggcctgggtaggcttc
agggaaaagctgaagaggattgtggaaagtaaatacttcaaccgagggatcatgatcgcc
atccttgtcaatactctcagcatggggatagaataccatgagcagccggaggagctgact
gatgtgttggagatcagtaacatcgttttcaccagtatgtttgtcttggagatgggcttc
atgctgctggcttttggcttgtttggatacatcaggaacccatacaacatctttgacagc
atcatcgttatcatcagtgtgtgggagataattgggcaagcagatggtgggttgtcagtt
ctgcgtacgttccgtctgctccgggttctgaagctggttcgtttcttacctgccctgaag
agacaacttgtagtgctgataaaaaccatggacaacgtcgctacattctgcatgctgctg
atgcttttcatcttcacttttagtatactgggtatgcatctgtttggttgtaaattcagt
cttcagacagatactggagacactatccctgaccgcaagaactttgattctctactctgg
gccatcgtcactgtattccagattctcacccaggaggactggaatgttgtgttgtataac
ggcatggcctctacctccccttgggcggctctctactttgttgccctcatgacatttggc
aactatgtgctcttcaatttactagtggccatcttggttgagggcttccaggctgagggt
gatgctaatcggtcagagtcagatgatgagaagaaatcggacaactttgaggaagacgag
aaggtagaacagctcagagacacagagctaaagatgtattctctgatgatgacagccaat
ggtcatgtggaccctcgtggctcgatggctcctcccataatcatgcgcacagcagccaca
cctatgcccactcctaagagctctctgggacctgagtctgtccttggggatgagctcatg
tacagagaggggatgtctcgatatggtgaagttggactcggcttttctgaagcaggaatt
ggtcatgtagactctcgccgtggaagctccacctctatggatcccttagcctatgaccag
cgttctctgggccactcaagtcccggccggcgctctcctcttcctccccgtgggtctggc
agctcatggggtagtcgccgctccagctggaacagcctgggaagagcgccgagcctcaaa
agacgagacaccagcggagagagggagagcctattgtctggggagggaggagaggaggaa
gatagtggggaggacaaaggcgaggctgggggaaacaacagactacgaccagggtccttg
gagctactgcaggcgtctactctctgcccttccataatagcagaatatggggactgtaat
ggaaggaccctgaactacgaacccaacctgaactccgaccctaaggaagactcttcacct
gacgatgacttggacgatgataattctttttgctactggatcaagaaagagctccgtagc
atgaagccccgctggtgtaaagagcatgaagaatgggcgctgtacttgttctctccagag
aacccattccgtttgtggtgccaaagggtgatctcccacaaaatattcgaccacgtggtt
ctcgttttcatcttcctcaactgcatcaccattgctttggaaagacctgaaatacagtct
cacagcacggagcgagtgttcctgagtgtgtccaattatgttttcactgtgatctttctg
gcagagatgaccataaaggttgtagctcatggtttctgctttgggaagcagagctacctt
cagtccagctggaacgttttggatggtttgttggtatttgtgtctctggtcgacattctg
gtctctttggcctatactggcggaaacaggatcctgggcatcctcagagtcttacgactg
ctacgaacactacgcccactgagggtgatcaatcgagccccaggactaaagctagttgtg
gagactctcatcacctcacttagacccattgggaacatcgtcctgatctgctgcgccttc
ttcattgtctttggcattttgggggtgcagctgttcaaagggaagttctaccactgtgaa
ggtctggacacgaaaaatatcaccaacaagtcagactgtttgcaagccagttaccgctgg
agaaggaggaagtacaactttgacaacctggttcaggctctgatgtctttgtttgtgctg
tcctgtaaggatggctgggtaaacatcatgtatgatggcctggatgcggtgggagtggac
cagcagcctgtgaggaaccacaacccctggatgctgctctacttcatctccttcttgctc
atcgtcagcttctttgtcctcaacatgtttgtcggtgtcgtggtggagaacttccacaag
tgccggcaggaccaggaggaggaggaggcccgcttacgggaagagaagaggctcaaaatg
atagagaaaaagcgcaggagtaaggagaatgaaggggctgaggccaagcagaggccttac
tatgcggactactctcccctacgtctcaccatccatacactgtgtaccagccattacctg
gacctcttcatcaccttcatcatctgcatcaatgtctttaccatgagcattgagcactac
aatcagccgcagtatctagaggaggttctgaagtactgtaactacgtgtttaccatcatc
ttcgtcatcgaggccctgctcaagcttttggcattcggtatacacaggttcttcaaagac
aggtggaaccagctggatatagctatagtggctctgtctatcatgggcatcaccctggag
gagttgaaaatgagcgcagcactgcccatcaatcctaccatcatcagaatcatgagagtg
ctcaggatagcacgagtactcaaactcctcaagatggccacggggatgagggctctgctg
gatactgtcatgcaagcgctgccacaggtgggaaatcttggtctcctcttcatgctgctc
ttcttcatctatgctgcacttggagtggagctttttggcaaactggagtgtaatgaacac
aacccatgtgagggtctgagtcgtcatgcaacctttgagaattttgggatggccttcctc
acactgtttcgagtgtccaccggagacaactggaatgggattatgaaagacacgttaagg
gaatgtcgtccagaagacccgcactgtctcagctacctgccattggtctctccaatgtac
tttgtcacctttgtgctcatggcacagtttgtgctggtcaatgtggtggtggctgttctg
atgaaacacctagaggaaagcaacaaggaagctaaagaggatgcagagatggatgcagag
atcgccatggaaatggaactggagagacaacgcaaattaagcgcaacctccaacaacagc
tcagggggagggacctatgttgggccatgcccacattcacctggagaggaagaagaggtg
caatacgtagaccaggacctgctgtcctcaaggaagatgtctgtatccaggatgcactct
ctgcccaacgacagctacatgttccgacctgtacggcctgccagcgccccctacgctttg
gaggaggtggataccagtccccaggaccagcattcgggctcaatgacgtcagtccactcc
cagccatgtgagagttacgctctgctgcaggtaccagacatttccccagttcaccctcgc
caacttccctccctcaccctgccctgcatcgccccacccacacccagcccctccctacgg
gccctgcgcagacaggtggcagttcaagtggattctgtagagtcgcagagttgtgagcaa
caagagaggcccacccctgtccatctgcctccccactccccttctccactttctcctctt
tccacctccccatttcctctgcctccgccacctccttcctccccctccgccctctctctc
ccaccatgttcccctactgccttcccactccctccaccttccccgtctctcttccctcct
ctactgtcttgccattctcccctccctcctctgccatcttccccctcacttcttctccct
ccgcctccctcaccgcgtctcccgttgcgccccgccagccttcggagacctagacacccc
tctgctgcctccctctgcgacccggcagatgaggaagtgtatcacatcaccagctcggcc
cagcacaggtggggagatgaggagggaggcgggcaggaaagcagagggaaggctggccgc
agtcactccctctccccttacacctccccgttttctctcgactactccacctcctcccct
cctcctcccccactgccaccttcttcctcgaggagcgcacttagtctgcttggggtgggg
ctgaaggaccgtgactttcggaagggctttagcgtcgatacccagggtttactggacaag
ccgtcatctttatttgctggttaccccgacgaccagcggcgccactccatcgaggtctgc
ctaccacaggctggcatcacaagtgacaaccaacactttttagagggggtccatcggtca
gaaaagagtgctcaggcttttcctgtgagagtgcagtcagtcgggggtggccacagaaag
aagaagatgagccccccttgcatttccattcacccaccctcagagagggagcacccaaaa
atggcctcacctccaaaactggctgactgcagcatgatgctgagacgcaggacaccgtcc
tatgatttgaccccacacatacagtcaaacacgcacacacaagactcggcagatacacag
atgcaccgagcgctcacacctatccatgtgccactgcaagcacactcaccaactcacacg
ctgacaccctcgcgggcttccacaccgacacgcacgcagtcatacactccanccgcacac
atccacaccgacattcccatcagcccaaacatctttatccaacctcatgcacctcttgtc
ccaaccactatgcctttctcacagacacactccctctcgccttctgcaaggcactcctct
ctcacaggggactacatccccctcccccaattcacctttgatcaaccacagtccagatat
ctgtcagacaccgatacagccacttgctcttccccttttgacagcagactgggaagcagt
gctggattcagtgcaaagaatcggaggaccgcccaatga
DBGET
integrated database retrieval system
