Scomber scombrus (Atlantic mackerel): 134000191
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Entry
134000191 CDS
T10651
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134000191 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134000191 (ddx5)
03009 Ribosome biogenesis [BR:
ssco03009
]
134000191 (ddx5)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134000191 (ddx5)
Spliceosome [BR:
ssco03041
]
Complex A
U1 snRNP components
U1 related factors
134000191 (ddx5)
Complex B
134000191 (ddx5)
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
Pre-60S particles
Helicases
134000191 (ddx5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134000191
NCBI-ProteinID:
XP_062295511
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All DBs
Position
18:complement(21593771..21599561)
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AA seq
626 aa
AA seq
DB search
MPGYADRDRGRDRDRDRDRGYGGGPPRFGGNRGGGGGGGGGKFGNPGERLRKKHWNLDEL
PKFEKNFYQQHPDVARRSLQEVEQYRRTKTITVKGRECPNPIQKFHEASFPSYVMDVINK
MNWTDPTPIQAQGWPLALGGNDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL
VLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF
LEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAE
DFLKDYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETK
RRCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVK
FVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKL
LQMAEVRGGRSRGGRGGDYRDDRRDRYSSGRRDFGNFRDRDSGRGFDNGPNKAFGTNTQN
GGYGSSNSGANGFSGGSYNGNGQSNFNSQAGSFGAPNNFQAPQFAPNKAGAQNGASHPPF
PFPQAQAPQHPPPPLVPYPMPPQFTQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatatgccgacagagatcgtggcagggaccgggacagagacagagacagaggc
tatggcggtggtcctcctcgcttcggtggtaaccgtggtggtggtggcggcggcggcgga
gggaagttcggtaatcccggtgaacgcctgcggaagaaacattggaatctggacgagctc
cccaagtttgagaagaacttttatcagcagcatcccgatgttgcccggaggagtctgcaa
gaagttgaacagtacaggaggaccaaaacaattacagtgaaggggagagagtgcccaaat
ccaatccagaagttccatgaggccagctttccctcctatgtgatggatgtgatcaacaaa
atgaactggactgatccaacacccatccaggctcagggatggcctctggctctcgggggc
aatgatatggtcggcattgcacagactggctctggcaaaacactttcttatctgttgcct
gcaatcgttcacatcaaccaccagcctttcctggaacgtggagatggtcctatttgcttg
gtgctggccccaacccgtgagctggcacagcaggtgcaacaggtggctgcagaatatggc
agagcttctcgcctcaagtcaacctgtatctacggaggagcacccaaggggccccagatc
cgtgaccttgaaagaggtgtggagatctgcatcgccaccccaggcaggctcattgacttc
ctcgaggcaggaaagacaaaccttcgtcgctgtacttatcttgtactggatgaggctgac
agaatgctggacatgggttttgaaccacagatcaggaaaattgtcgaccaaatcagaccc
gaccgtcagactctgatgtggagtgccacttggcccaaagaggttcggcaactggcagag
gacttccttaaggactacgtgcagatcaatgttggtgctctgcagctcagcgccaaccac
aatatcctacagatagtggatgtctgcaacgatggagaaaaggagaacaaactcatccgt
ctgcttgaggaaatcatgagtgaaaaggagaacaagaccatcatctttgtagagacaaag
aggcggtgtgatgacctcacaaggaggatgaggagggatggatggcccgctatgggaatc
catggagataaaagccagcaggaaagagactgggtactcaatgagttcaaatatggaaag
gctccgattctcattgctacagatgttgcctccaggggtctagatgttgaagacgtgaaa
tttgtcatcaactttgactaccccaacaactctgaggactatatccatcgcattggcaga
acggcacgtagtcaaaagacaggcacggcctataccttcttcactccaaacaacatgagg
caggccagcgacctcatctctgtgctccgcgaggccaaccaggcaatcaaccccaagctc
ctccaaatggcggaagtcagaggagggcgttcaaggggcggcagaggtggtgattacaga
gatgaccgccgggataggtattcttcgggaagacgtgactttggcaattttagggaccgg
gatagcggtagaggttttgacaacggaccaaataaagcctttggcacaaatacacagaac
ggaggctatgggagcagtaacagcggcgccaatggcttcagcggtggcagctacaatggt
aatggacagtccaactttaacagccaagcaggatccttcggagccccaaacaacttccag
gccccgcagttcgcccccaataaggctggcgcacagaatggcgcaagtcatccccctttc
cccttcccccaggcacaggctccgcagcatcctcccccaccgctggtgccctaccccatg
cctcctcagttcactcagtaa
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