KEGG   Scomber scombrus (Atlantic mackerel): 134000240
Entry
134000240         CDS       T10651                                 
Name
(RefSeq) ras-related C3 botulinum toxin substrate 1-like
  KO
K04392  Ras-related C3 botulinum toxin substrate 1
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010  MAPK signaling pathway
ssco04145  Phagosome
ssco04148  Efferocytosis
ssco04310  Wnt signaling pathway
ssco04370  VEGF signaling pathway
ssco04510  Focal adhesion
ssco04520  Adherens junction
ssco04530  Tight junction
ssco04620  Toll-like receptor signaling pathway
ssco04810  Regulation of actin cytoskeleton
ssco05100  Bacterial invasion of epithelial cells
ssco05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    134000240
   04310 Wnt signaling pathway
    134000240
   04370 VEGF signaling pathway
    134000240
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    134000240
   04148 Efferocytosis
    134000240
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134000240
   04520 Adherens junction
    134000240
   04530 Tight junction
    134000240
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    134000240
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    134000240
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    134000240
   05100 Bacterial invasion of epithelial cells
    134000240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssco04131]
    134000240
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    134000240
   04031 GTP-binding proteins [BR:ssco04031]
    134000240
Membrane trafficking [BR:ssco04131]
 Exocytosis
  Small GTPases and associated proteins
   Rho GTPases
    134000240
 Endocytosis
  Lipid raft mediated endocytosis
   Arf6-dependent endocytosis
    134000240
  Macropinocytosis
   Ras GTPases
    134000240
 Others
  NADPH oxidases (Nox) and associated proteins
   Nox associated proteins
    134000240
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   134000240
  Exosomal proteins of other body fluids (saliva and urine)
   134000240
  Exosomal proteins of colorectal cancer cells
   134000240
  Exosomal proteins of bladder cancer cells
   134000240
GTP-binding proteins [BR:ssco04031]
 Small (monomeric) G-proteins
  Rho Family
   Rac/Cdc42 [OT]
    134000240
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU
Other DBs
NCBI-GeneID: 134000240
NCBI-ProteinID: XP_062295566
LinkDB
Position
18:complement(14790359..14796082)
AA seq 192 aa
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
DDKDTMEKLKEKKLSPITYPQGLAMAKEIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
PVKKKGKKCSLL
NT seq 579 nt   +upstreamnt  +downstreamnt
atgcaggccataaagtgtgtcgttgtcggggacggagctgtgggtaagacctgcctgctc
atcagctacaccaccaatgcctttccaggagagtacatccccacagtgttcgacaactac
tccgccaatgttatggtggatgggaagcccgtgaatctgggcctttgggatacagcagga
caagaagactacgacagactccgcccactttcctacccacagacggatgtgtttctcatc
tgcttttcgcttgtgagtccggcctcgtttgaaaacgtccgtgccaagtggtaccctgag
gtgagacaccattgtcccaacacacccatcatccttgtgggcaccaagttggatctgaga
gatgacaaggacactatggagaagctgaaggagaagaaactctctccgatcacctatccc
caaggcctggcgatggccaaagagattggctccgtcaagtacctggagtgctcagccctg
actcaacgtggccttaaaactgtgttcgacgaggccatccgggccgtactctgccctcca
cccgtgaagaagaaggggaagaagtgcagcctcctctaa

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