Scomber scombrus (Atlantic mackerel): 134000252
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Entry
134000252 CDS
T10651
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17 isoform X1
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134000252
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134000252
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134000252
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134000252
NCBI-ProteinID:
XP_062295586
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All DBs
Position
18:complement(20972552..20981480)
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AA seq
642 aa
AA seq
DB search
MRGSYGDRDRDRDRGRDRGSPRFGSSRGGQPTGKKFGNPGDRLRNKRWDLEELPKFEKNF
YSEHLEVQRMSQYEIEEYRRKKEITVRGSGCPKPITNFHQAQFPQYVMDILMQQNFKEPT
AIQAQGFPLALSGRDMVGIAQTGSGKTLSYLLPAIVHINHQPYLERGDGPICLVLAPTRE
LAQQVQQVAYDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALELSANHNILQIVDVCMESEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDDLT
RRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYIHRIGRTARSNNKGTAYTFFTPGNLRQARELIRVLEEARQAINPKLLQLVDTG
RGGGGRPRFRAGSNSKNPNLMYQDECDRRMRSVEGGSSTKESRSSYSRSSRDSRGGSTRD
GDRSSSSSSSSYRDRSSRDGGRSYSSSSNSYNQYQNNSSSSQYSSSRGGSGSGGVGQAPS
SSSAPQPLMAQQFNPPQPMMGLMGHSPFQFAPPPPPAPSSRK
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgagaggctcgtacggagacagagaccgagaccgagaccgtggtcgtgacagaggcagc
cctcgtttcgggtcaagcagaggcggccaacccacgggtaagaagtttgggaaccccggg
gaccgtttacgaaataagagatgggacctggaagagctccccaaatttgagaagaacttt
tatagtgaacacctggaagtgcagcgcatgagccagtatgaaattgaggagtatcgcagg
aagaaagaaatcactgttcgtggttcaggctgcccaaaacccatcaccaacttccatcag
gcacagtttcctcaatatgtaatggatatcctgatgcagcaaaactttaaggagcccaca
gccattcaggcacaaggtttccctctggccctcagcgggagagacatggtgggcatcgct
cagacgggttctgggaagactctatcgtatctcctgcctgccattgtacacattaaccat
cagccctacttggagcgtggagacggacccatttgtctggttctggcccccacaagagaa
ctggcgcagcaggtccagcaggtggcatacgactatggaaagtcatcccgcatcaaaagc
acttgtgtgtacgggggtgctcccaagggaccccaaatccgagatctggagagaggtgtt
gagatctgcattgccactccaggtcgcttgattgacttccttgaggcgggaaagaccaac
ctgcggcgctgcacatacttagttctagatgaagctgaccgcatgctggacatgggattt
gaaccacagattcgcaaaattgtggaccagatcaggccggacagacagaccctgatgtgg
agtgctacctggcctaaagaggttcgccagctggccgaggactttctgaaggactacgtg
cagatcaatgttggagccctggagctcagcgccaaccacaacatccttcagatagttgac
gtctgtatggagagtgagaaggacaacaagttgatccagctaatggaggaaattatggcg
gagaaagagaacaagaccatcatctttgtggagaccaagaaacggtgtgatgacctcacg
cgcaggatgagacgcgatggttggccagcgatgtgtattcatggcgacaagagccaacca
gagagagactgggtgttgacagagttccgcagcggcaaagctcccatcctcatcgctact
gatgtggcctcgcgtggtttggatgtggaggatgtcaagtttgttatcaattatgactat
cccaactcatcggaggactacatccaccgtattggccgtacggcccgcagcaacaacaaa
ggcactgcatacactttcttcactccggggaacctccggcaggcccgcgagctgatccgg
gtgctagaggaggcccgacaggccatcaatcccaaactgctgcagctggttgacactgga
cgtggaggaggtggccgtcctcgtttccgtgccggctctaattctaaaaatcccaaccta
atgtaccaggacgagtgtgacaggagaatgcgttccgtagaagggggcagcagcaccaaa
gaaagccgtagcagctacagccgcagcagccgagatagccgtggaggaagtacccgggac
ggggaccgctcctcctcctcctcttcctcctcttacagagatcgcagcagcagggacgga
gggcgcagctatagctccagctccaactcatacaaccagtaccagaataacagcagcagc
agccagtacagcagctccaggggagggtcagggagtggtggagtaggccaggccccgtct
tcctcatcagccccccagcctctaatggctcagcagttcaaccctccccagcccatgatg
ggcctgatggggcattccccatttcagtttgctcctccacctccacctgctccctctagc
aggaagtaa
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