Scomber scombrus (Atlantic mackerel): 134000262
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Entry
134000262 CDS
T10651
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134000262 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134000262 (xab2)
03041 Spliceosome [BR:
ssco03041
]
134000262 (xab2)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134000262 (xab2)
Spliceosome [BR:
ssco03041
]
Complex B
Other components
Prp19-related factors
134000262 (xab2)
Complex C
134000262 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
SNAP
TPR_MalT
NRDE-2
TPR_1
Big_2
Motif
Other DBs
NCBI-GeneID:
134000262
NCBI-ProteinID:
XP_062295606
LinkDB
All DBs
Position
18:complement(11322368..11330022)
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKTDVIFENDDLPYEEEIIRNPYSVKCWMRYIEFKQNGSKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPVYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLGAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEIGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLATVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATEAVETQERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRVTAEFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTSSTGTVSDLAPGQLGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDDEDHGPDEVQLEQKSVPTA
VYGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaaacggatgttatatttgagaacgatgatctgccttacgag
gaggagattatcagaaacccatactcagtcaagtgctggatgcggtacatcgaattcaaa
cagaatggatccaaatccaccctcaatatgatatatgaacgggctctgaaagagcttcct
ggaagctataagctatggtacaattacctgagagagagaaggaaacaagtcaaaggaaaa
tgtatcactgaaccagtttatgaagaggtcaataattgccatgaaagggcattggtgttc
atgcataagatgcccagaatatggcttgattactgccagttccttgtatctcaatgtaag
atcacaagaagcaggcgaacatttgaccgtgcgctcagagctctacccgtcactcagcac
ccacgtatctggcctctgtatctccgctttgttcgtaacctgcccctgcctgaaacagcc
atacgagtgtaccgcaggtaccttaagctttctccagagaatacagaggaatacatcgac
tacttacggtctgttggccgcttggatgaagcagctgtgcggcttggagctgttgtcaat
gatgaaagctttgtgtccaaagagggcaagtccaactaccaactgtggcatgagttatgc
gacctgatctcgcagaaccccgataaggtgacctccctgaatgtaggagccatcatccgg
ggaggcctcactcgctttacagaccagcttggcaaactttggtgctctttggctgactat
tacatcaggagtggtcactttgaaaaggcccgtgatgtatatgaggaggccatcctaact
gtggtaacagtaagggatttcacacaagtgtttgatagctacgcccagtttgaggagagc
atgatcgctgccaagatggagaccactgctgagatcgggcaggatgaagatgatgacatc
gacctggagcttaggctggcccgctttgagcagctgatagcacggcggcctctcctgttg
aacagtgtactgctgcggcagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctgtatgagggaaatccacggcagatcatcaacacatacactgaggcagtacagactgtg
gatccaatgaaggccacgggaaagcctcactctctctgggtttcttttgctaaattctat
gaagaaaatgagcagctggatgacgcaaggactatctttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgccacagtgtggtgtgaatatggagagatggagctgcga
cacgaaaactatgaacaggcactgcgcatactcaggaaagctacagccatcccatccaag
aaagcggagtactttgatgcatctgagccagtccaaaacagagtctacaagtccttgaag
gtctggtctatgctggcagatttagaggagagtcttggcactttccagtctacaaaagca
gtctatgaccgcattattgacctccgcattgccacaccacagatcatcatcaattatgcc
atgttccttgaagagcacaactattttgaggaaagcttcaaagcatatgagcgtggcatc
gctctcttcaggtggccaaatgtttacgacatatggaacacttacctaaccaagtttatt
gatcgttatgggggcaagaagctggagagagccagagatttatttgaacaagccctggat
ggctgtcctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggag
tatggattggcacgacatgccatggctgtatatgagagagcaacagaagctgtggaaact
caggagagacatcacatgttcaatatctacatcaagagagcagctgaaatatatggagtc
acatataccagagcaatttaccagaaggctattgaggtccttcctgatgaacatgcaagg
gacatgtgcctgcgatttgctgacatggagagtaaattgggtgagattgatcggggcaga
gccatctactcctactgctcccagatctgtgaccccagggtgacagctgaattctggcag
acttggaaagaatttgagatccgccatggaaatgaggacactattagagaaatgctgagg
atcaagcgcagtgtccaggcaacatacaacacccaggtcaatttcatgtcctctcagatg
atgaaggccacaacaagctctacaggcactgtgtcagatcttgctccaggccagttgggc
attgatgacatgaagatgctggagcagaaagcacagcagcttgctgcagaggcagagcag
gataaacccaaaccaaaagaaaagattctctttgtcaggagtgacacctctcgcagtgag
ttggctgaactttccaaacaagcaaatcctgatgagattgacattgatgatgatgatgaa
gacgatgaagaccacggcccagatgaggtgcaacttgaacagaagagtgtccccacagct
gtctatggagggctcaaagatgactga
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