KEGG   Scomber scombrus (Atlantic mackerel): 134000409
Entry
134000409         CDS       T10651                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssco04121]
    134000409 (hltf)
   03400 DNA repair and recombination proteins [BR:ssco03400]
    134000409 (hltf)
Enzymes [BR:ssco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     134000409 (hltf)
Ubiquitin system [BR:ssco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    134000409 (hltf)
DNA repair and recombination proteins [BR:ssco03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    134000409 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4_3 zf-C3HC4 DEAD zf-RING_UBOX zf-RING_2 zf-RING_5 RING_XB3-XBAT31 ResIII zf-ANAPC11 zf-C3HC4_4 DUF5817 Prok-RING_4 zf-rbx1 zf-Nse zf-RING_4 zf-RING_6 HDA2-3
Other DBs
NCBI-GeneID: 134000409
NCBI-ProteinID: XP_062295722
LinkDB
Position
19:complement(9137148..9148921)
AA seq 965 aa
MFPPRWRFSWDRCTEVDLFTDRHTLSQAISAAAAEEPDADGSVLYGQLKGTVVGLKYYTG
VVNKGEMVGLVREPQNPYDSNAVKVTNIYGSQVGHIKRQLAAAMAYVMDKTLAKVEGVVY
SGTNNAFSMPVILSFWGKEENKNAVTEAMVRRGFKLDTGGIKLAGANQTSSNSPGAWTMA
SKKGLTTRLTANELKNAFDNLFEGLMESKDGEKEAAESVSTPLLLHQKQALSWMCARENK
CALPPFWEKRGELYYNSLTCFSAKEIPERVRGGILADDMGLGKTLTTIALILTNFQKGKP
LPVEKCEEQSSPRKASTKSQMVSKPEGSSSAGDGAGGSDTAAGSLCADSAKMEVICVDTP
DVVEKADKSEKSAGKGKMKATKRKPSKEAPVLLEDLDFAAALCGSSSDTAFKKKKTTVKA
GPSQSVESSIIESADDLSARTTLIICPLSVLSNWLDQFEQHVQADVKLNVYLYYGSERNR
SKKFLSSQDVVITTYNVLSADFGNKSPLHGISWLRVVLDEGHVVRNPNAQMSKAVLDLKA
QRRWILSGTPIQNSVKDLWMLVAFLRLKPFDAREWWNRVIQRPATQGEREGLQNLQTLVK
CITLRRTKSSEVNGRPLVCLPEKTVCVEQVELSQPEREEYELARNEGRNTISRYMAEGTV
LRNYADVLAVLMRLRQHCCHPDLLAKTSSDLGVAATPAELREHLIEKLRLVLASGSDEEC
SVCLDSIHLPVITHCAHVFCRPCIAKVISTEEETARCPLCRTEIKTNELVEFPQEEIEEE
NSANSVKWRTSSKVQALMGNLLRLRCEDSSIKCLIVSQFTRFLNVLETPLREHGFSFVRL
DGTLSQKKRAQVIQEFQSSGADSPTIMLLSLKAGGVGLNLTAASHVFLMDPAWNPATEEQ
CIDRCHRLGQKRNVFVTKFIVKDSVEENMVKIQRKKQDLVEKAFGSTNTNRKTSRIDDIK
ALMEL
NT seq 2898 nt   +upstreamnt  +downstreamnt
atgtttccccccaggtggaggttcagctgggacaggtgcactgaggtggacctcttcaca
gaccgccatactctctcccaggccatcagtgctgcagcagctgaggagccggatgcagac
ggcagtgtgctgtatggccagctgaagggcactgtggtcggcctcaaatattacacaggg
gtggtgaacaagggggagatggtgggtttagttcgagagccacagaatccgtatgacagc
aatgcggtgaaggtgaccaacatttacggcagccaggtggggcacatcaagcggcagctg
gcagcagctatggcttacgtcatggacaaaacgttggccaaggtggagggggtggtgtac
tcagggacgaacaacgcattctccatgccggtgatactgtccttctgggggaaagaagag
aacaaaaatgctgtgactgaagctatggtacgtcgtggatttaaactcgacacaggtgga
atcaaactagcaggtgcaaatcagacatcttccaacagtccaggtgcttggacaatggca
tctaaaaaaggtttgaccacccgactaactgcaaacgagctgaagaacgcatttgacaat
ctgtttgaaggcttgatggaaagtaaagatggggagaaggaagcagctgagtctgtgagt
actcccctgctgctccaccagaagcaggcgctctcttggatgtgcgcccgagaaaacaaa
tgtgcgctcccacccttctgggagaagagaggcgagctgtactacaacagcctcacctgt
ttctctgccaaagaaataccggagagggttcggggggggatacttgcagatgacatggga
cttgggaaaactctgacaaccatcgctctgatcctcaccaacttccaaaaaggaaagccc
ctgcctgtggagaaatgtgaggagcagtcttcacctagaaaagccagtactaaatcacag
atggtctccaaaccggaaggaagcagcagtgcaggcgatggggcaggagggagcgataca
gctgctggctctctatgcgcagactctgccaagatggaggtgatctgtgttgatacgccg
gatgtagtggagaaagcagacaagtcggagaaaagtgcaggcaaaggaaagatgaaagcc
accaagcgaaagccaagtaaagaggccccggtattactggaggatctggactttgctgcc
gcgctgtgtggctcatcatcagatacagcctttaagaagaagaaaactaccgtgaaggct
ggtccctcacagagtgttgaatcctccatcattgaaagtgcagatgatttatcagccagg
acgactctcatcatctgcccgctgtctgtgctcagcaactggctggaccagtttgagcag
catgtgcaagctgacgtgaagctaaatgtgtatctgtattacggctcagagcgcaacaga
agcaagaagttcctgtcctcgcaggatgtggtgataaccacgtacaacgtcctctctgct
gactttgggaataagagtcccctccatgggatcagttggctgagagtcgtgctggatgaa
ggacatgtcgtacgaaaccctaatgctcagatgagcaaggccgtgcttgacctcaaagct
cagcggcgctggattctgtctggaacgcctatccagaacagtgtgaaggatctgtggatg
cttgtggctttcctgcgtctgaagccgttcgatgcgagggagtggtggaacagagtgatc
cagagacccgctacacaaggagaacgggagggcctgcagaaccttcagacccttgtgaag
tgcatcaccctgcgacggaccaagagcagtgaggtgaatgggcgccctctggtgtgtctg
cctgagaagactgtatgtgtggagcaggtggagctgagccagccggagagggaggagtac
gagctggcacgcaatgaaggaagaaacaccatcagcagatatatggctgaagggacggtt
ttgaggaattacgctgatgtcctggccgtcctgatgaggcttcgacagcactgctgccat
cctgatctgctggcaaagacatcctcagatttaggtgttgcagcgacgcctgcagagctt
cgggagcatctgatagagaagcttcggctggtgttggccagtggctctgatgaggagtgc
tctgtgtgtctggactcgatccatctgcccgtcattacacactgcgcccacgtcttctgc
cggccctgcatcgcaaaagtcatcagcactgaagaggagacggcccgctgccctctctgt
cgcactgagataaagaccaatgaactggtggagtttccgcaggaggaaattgaagaagag
aacagtgcaaactctgtgaaatggagaaccagctcaaaggtgcaggcgttgatgggaaac
ctgctcaggctgcgatgtgaagacagcagcattaaatgtttgatcgtctctcagtttaca
cgtttcctcaacgtactggagactccgctcagagagcacggtttcagttttgtgcgtttg
gacggcaccttgagccaaaagaagcgcgcccaggtcatccaggagtttcagagctcaggg
gccgacagccctaccatcatgctcctgtcactcaaagctggaggggtggggcttaacttg
actgccgcctctcatgttttcctcatggatcctgcatggaacccagctactgaggagcag
tgtattgaccgctgccatcgtctgggtcagaagagaaacgtttttgtcactaagtttata
gtgaaggactcagtggaggagaacatggtgaagatccagaggaagaagcaggatctggtg
gagaaggctttcggttccacaaacacaaacaggaaaacatctcggattgatgacatcaaa
gctctgatggagttgtag

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