Scomber scombrus (Atlantic mackerel): 134000555
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Entry
134000555 CDS
T10651
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04137
Mitophagy - animal
ssco04140
Autophagy - animal
ssco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134000555 (hif1aa)
04137 Mitophagy - animal
134000555 (hif1aa)
04148 Efferocytosis
134000555 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
134000555 (hif1aa)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
134000555 (hif1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
134000555
NCBI-ProteinID:
XP_062295908
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All DBs
Position
19:complement(14611139..14628090)
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AA seq
763 aa
AA seq
DB search
MDTGIAPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LIISYLRMRKLLSTDEPVAEEETELDIQLNSSYLKALEGFLMVLSEDGDMIYLSENVNKC
LGLAQFDLTGHSVFDFIHPCDQEELREIMVHRTGSKKTKEQNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRLYDSHTEQTPNVHKEPPVPYLVLICDPIPHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQV
TTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLSGIQEEKLIMSLEQTEDM
KSVKEEQQEEEKAEVEISEPDMSPVLLKDEEEKTPELDMVKLFTQVADVKPLASLYDQLK
EEPEALTLLAPAPGDTIISLDFSCPDSEMQLLETVPLYNDVMLPSTNDKLDLPLSPLPPS
EPLHVTTTNSENLKTQSFAPTPSTTSTSQSSSETDSPLDFCFPMDSDMSSDFKLDLVEKL
FAIDPQPKTPFTKQAMEDLDLEMLAPYIPMDDDFQLRSLTPDETLSCGVKSLESSPLRSV
ESSPLHVTQEVNIYPTSPFSSPGSQAASPAPPEPVNAPLPATIIAKRTPQLDKEVSLRTL
AAQNAQRKRKLGDLRELFGQGSLPQEQLEQGKKLKSSESGTTRTILLLPSDLASRLLGTA
EGTSSPFTLPQLTRYDCEVNAPLQGRQYLLQGEELLRALDHVN
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgcacccgaaaagaaaagagtgagctcagagcggaggaaggagaag
tcaagggatgctgcacgatgccgacgcgggaaggagtccgaggtgttctacgagctggcc
cagcagctgccgctgcctcacagcgtcagctccagcctggacaaggcctccatcatgaga
ctcatcatcagctacctgcgcatgagaaaacttctaagtactgatgagccagtggcagag
gaggaaacagagcttgatatccaactaaacagctcctacctaaaggctctggaaggcttt
ctcatggtgctgtcggaagacggagatatgatctatctctctgagaatgtcaacaagtgc
ctggggctggcacagtttgacctgactggacacagcgtgttcgacttcatacatccctgt
gaccaggaggagctgagggagataatggtccacagaacaggctccaaaaagaccaaggaa
caaaacacagagcgcagcttcttcctccgaatgaagtgcactctcacaagcagaggccgc
actgtcaacgtgaaatcggccacatggaaggtgctccactgctcaggtcatgtgcgttta
tatgacagccacaccgagcagactcccaatgtccacaaggagccacctgtcccctacctg
gttttgatctgtgaccccatcccacacccctccaacattgaagtccctctggatacgaag
acctttctcagccgccacacaatggacatgaagttcacatattgtgacgaaaggatcact
gagctgatgggttatgatccagaagacctgctgaatcgttcagtgtatgagtactaccat
gcccttgactcggaccatctcaccaagactcaccacaacttgtttgcaaagggccaggtc
accacaggccagtacaggatgctggccaagagaggaggctttgtgtgggtggaaacccag
gccactgtcatctacaacaacaagaactctcagccacagtgtgttgtctgtgtcaactat
gtgctcagtggcatccaggaggagaaactgatcatgtctctggaacagaccgaggacatg
aagtcggtgaaggaggagcagcaggaagaggaaaaggctgaggtcgagatcagtgagcca
gacatgtcaccagtcctgctgaaggacgaagaggagaagaccccagagctggatatggtc
aagctgttcacccaggtggctgatgtcaagccactggctagcctgtatgatcagttgaag
gaggagcctgaggccctcaccctgctggccccagcccccggagacacaatcatctccctg
gacttcagctgccctgattcagagatgcaactgctggagactgtccctctctacaacgat
gtaatgcttccctccaccaatgacaagttggatctgcctctttcccctctgccgcccagc
gagcctctccatgtcaccaccaccaactctgagaacttgaaaactcagagctttgctcca
acaccgtccaccacatcaaccagccagagctcctcagagactgacagcccattggacttt
tgtttcccaatggactctgatatgagctcagatttcaaactagacttggtggagaagctg
tttgcaattgacccacaacccaaaactcccttcaccaaacaggcaatggaagacctggat
ctggagatgttagcaccctacatccccatggatgatgacttccagctgcgtagtttgacc
ccagatgagaccctctcttgtggagtaaaatctctggagagctctcctctccgctccgtg
gagagctcccctctccatgtcacgcaggaagtcaacatctatcccacctcccctttcagc
tcaccaggtagtcaggctgcttcaccagcaccacccgagccagtaaacgcccctcttcct
gccaccatcatcgctaagaggaccccacagttggacaaagaagtctctctcaggaccctg
gcagctcagaacgcacagcgcaaaaggaaactgggcgacctaagggaactttttggacag
ggatctttgccccaggagcagctggaacagggcaaaaaactgaagtcctcagaatcagga
acaaccaggaccatacttctgctgccttcagatttggcgagtcgtctgctgggcacagca
gagggcaccagttcacccttcaccctgccgcagctcacccgctacgactgcgaggtcaac
gcccctttacagggtcgccagtacctgctgcagggggaggagctgctgcgtgcactggac
catgtcaactga
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