Scomber scombrus (Atlantic mackerel): 134000581
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Entry
134000581 CDS
T10651
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134000581 (srrm1)
03015 mRNA surveillance pathway
134000581 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134000581 (srrm1)
03041 Spliceosome [BR:
ssco03041
]
134000581 (srrm1)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134000581 (srrm1)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
134000581 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
134000581
NCBI-ProteinID:
XP_062295944
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Position
19:19190092..19199972
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AA seq
864 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKVMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDEDKKEKDKDIRDRAQSKSPRRRKTRSPSPRRR
SPVKRERKRSPSRSPRRKASPVGGSSPPPPLMQLPSKPLEQLVEPDTSGRAMPEPVVQEA
SSTCDTVVEVVKADSVTEVKEPSPEKIQKKEERPRSREREKDSRRERPHHRSRSHSRSRR
RRSRSRSFSPRRRQSPRRRMSPRRRSPPRRGPTGSRHRHRRSPVRSRRRSRSASSSGSSS
SGSRSPKKAMKRISNTPPRKQAHHPDASISPAGKDRRSPSPRARRGRGSASPPRSSGLKR
KQGGRGDSPSDNAKSRPSEGSESEEDKNEKGATADSVQQRRQYRRQNRQTSSDTGSSSSE
DEGPKRPKAGPGARNGEARRRRSRTPSPRRRHRDASPRKRRSPSPGGRRRRSPSPPRRRR
SPSPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRRFSNSPSKRSSPGAKRRP
SRSPKRRSSPAQRRRTPPSSASPPRHRRSPMLPSVRPSRDTRSPVAAASRLSPSPANRGR
AVRGSTSPQGRFETSSTSPCSQRRQSPSHTGKPIRRVSRTPEPRNNQRPSPSPQPMRRVS
SRSRSVSPQPVAPKRPAAASASPSPSRSASVSPPPAKKASSGSGSQSPSKNSDVDGSGKK
KKKKKEKKHKKEKKHKKHKKHKKEKSGAAGTGDGQENQGVDEDGESRKESDSEVDDSLDD
LEKHLREKALRSMRKAQISPSQMS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggcttcttccgcggcacaagtgcggagcaagacaaccggttcagcaacaag
cacaagaaactgctgaagcagctgaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctggaagtcatcaaaccttggattaccaagcgcgtgacagagattctg
gggttcgaggatgacgtcgtcatagagttcatatttaaccagcttgaggaaaagcacccg
gatagcaaggtgatgcagatcaacctgacaggcttcctgaatgggaagaacgccagggag
ttcatgaaggatctgtggcccctgctgctgagtgcccaggagaacattgctggcatcccg
tcagcttttctggaacagaagaaggaggaaatcaaacagagacagattgagcaggagaag
ctagcgtctctgaagaaggtggatgaggataagaaggaaaaagacaaggacatcagagat
agagctcagtcaaagagcccaaggaggcggaagacaagatcaccatcaccacggcgaagg
tcaccagtgaagcgagaaaggaaacgaagcccctcacgctcccccagacgtaaagccagt
ccagtcggaggtagttcaccccctccacctctgatgcagctgccctcaaaacctttggag
cagcttgtggagccggacacatcaggaagagccatgccggaaccagtcgtccaagaagct
tcttcgacctgtgacacagttgtggaggtggtgaaagcagactcagtgactgaagtcaaa
gaaccctccccagagaaaattcagaagaaagaggaaaggccccggtctcgggaaagggaa
aaggacagcaggagggaacgacctcaccaccgctcccgttctcattcccgctctcgcaga
cgacgctcccgttcaaggtctttctcccctcgtagaaggcagagtccaaggagaagaatg
tctcctcgtcgaaggagccctcccagacgaggtcccacaggctctagacatagacacagg
cgctcccctgtccgcagcaggaggcgttctcgttcagcttcatcctctggcagcagctcc
tcaggctcccgttcacctaaaaaagcaatgaaaagaatatccaacactccaccccgaaaa
caggcccatcatccggacgcctccattagtcctgctgggaaagatagacggtcaccatct
ccacgggccagaaggggcagaggctcagcgtcaccacccagatcatctggtctgaagcgt
aaacaaggaggaaggggtgattctccatctgataatgccaaatccagaccttctgaagga
tccgagtcggaggaggataaaaatgagaaaggggcaacagcagattcggtgcaacagcga
cgtcagtatcgcagacagaatcgacaaacgtcttcagatacagggtcttcctcttcagaa
gatgaggggcccaagaggccaaaggcagggccaggtgccagaaatggtgaagccaggagg
cgacgtagccgtacaccttctccacgaaggcgacacagggatgcctctccaaggaaaaga
cgttctccatctcctggtggacgtagacgtcgctctccttctccgccacgacgtcgcaga
tctccctctcctcctagacgcaggtctccttccccacctccccgccgacgatctccatcc
ccgagacgttactctccccccatccagcgtcgctacagcccctcacctttacctccacag
aagaggaggttttctaactctccctcaaaacgctcttctccaggggcaaagcgacgccct
tccaggtcccccaagcgcagaagttctcctgctcaaaggcggcgcacacctccttcttca
gcgtctccacccagacacaggagaagccccatgttgccttccgtgaggccaagcagggat
acacgatctcctgttgcagcagccagtcgcctctccccgtcccccgcaaaccgcggccgt
gctgttaggggttccaccagtcctcagggacgttttgaaacctctagtacatctccatgt
agccagcggaggcaatccccctcacacactggtaaacccatccgcagagtttcccgcacc
ccagagccacgtaacaaccagagaccatctccgagccctcagccaatgaggagagtgtcc
tccagatccagatctgtttcccctcaaccagtagctccgaaacgtccagctgctgcatct
gcttcaccctcaccatctcgctctgccagtgtgtccccaccaccagccaagaaggccagc
agtggttcaggcagtcagtcaccaagcaagaattcagacgttgatggcagtggaaagaaa
aagaagaagaagaaggaaaagaagcacaagaaagagaagaaacacaagaagcacaagaag
cacaagaaggagaagagtggtgctgctgggactggagatggacaagagaaccagggtgtg
gatgaggatggagaatcgagaaaggaatcagacagtgaagtagacgacagcctggacgac
ctggagaaacaccttagagagaaggccctgcgctccatgaggaaggcccagatttctcca
tcacaaatgtcctga
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