Scomber scombrus (Atlantic mackerel): 134000770
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Entry
134000770 CDS
T10651
Symbol
lrfn5a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134000770 (lrfn5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
134000770 (lrfn5a)
04990 Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
134000770 (lrfn5a)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
SALM family
134000770 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
134000770 (lrfn5a)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_5
LRR_1
ig
Ig_2
LRR_9
Ig_VEGFR-1-like_5th
C2-set_2
fn3
C2-set_3
FN3_DSCAM-DSCAML_C
Rop
Motif
Other DBs
NCBI-GeneID:
134000770
NCBI-ProteinID:
XP_062296228
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All DBs
Position
19:complement(20665189..20688224)
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AA seq
873 aa
AA seq
DB search
MERLLLCVMLAVAIAVRAQVCPKRCVCQILSPNLATLCAKKGLLFVPPNIDRHTVELRLA
DNFVTSVKRKDFANMTRLVDLTLSRNTISFITPHAFTDLENLRALHLNSNRLTRIGNDTF
SGMSKLHHLILNNNQLVMIHQGAFNDLLALEELDLSYNNLDSIPWEAIQKMISLHTLSLD
HNMLDFIPEGTFSLLQKLNRLDVTSNKLQKLPPDPLFQRAQVLATSGIMTSSSFALSFGG
NPLHCNCELLWLRRLYREDDLETCASPQHLSGRYFWSIPEEEFLCEPPLITRYSHEMRVL
EGQRVALRCKARGDPEPAIHWISPEGKLVSNSSRTLVYTNGTLDILISTVKDTGSFTCIS
SNPAGEAHQTIDLVIIKLPHITNNTNNIQEPDPGSSDISTSTRGGANGNNVTGDVKGGVD
KRVVTAEATSSTALIKFNFQRTIPGIRMFQIQYNGSQDDSLVYRMIPPSSKNFLVNNLAA
GTQYDLCVLAIYDDVITSLTATRVVGCVQFSTESEYMRCHFMQSQFLGGTMIIIIGGIIV
ASVLVFIIILMIRYKVCNPGEGGKGVSMSMTNVHSQTNGQQSQGCTVTPSASKHGSIGLE
DHSGGSKKRGGGAGGGGKDSITQSSESSLPDCSTTTSVLSQPWSARSPTGGSEEKAGEER
GSLAAERAQAGISSPTATGTLTKPKRKPTPNKPGSACSNSSATPENLASSSPRPPTSSST
ASSALLPSSIPLENLNTNRNNSTSLNQTPPPPFSPSCFSTPFATPSPVPSIQFRETPILR
RAPRTSSSSSAKYQTLPVEEGGRSRARRRYSLSEGGSTKTHLPHQGGGGAPKLGRIMRNK
RSQSVSGMLLPKEEDGDTDKGRCDSDWILESTV
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggagcgactgttgctgtgtgtgatgttggcagttgccatagcagtgcgggcacaggtc
tgtccgaagcgctgtgtatgtcagatcctgtcccccaacctggcaaccctctgtgccaag
aaaggtctactgtttgtaccaccaaacattgataggcatacagtggagctacggctggct
gacaactttgtcacaagtgtgaagagaaaagattttgcaaacatgacacgactggtggac
ctaacattatccagaaacaccatctccttcatcacacctcatgccttcaccgatctggag
aacctcagagctctacacctcaacagtaaccggctgacaaggataggcaatgatacattc
agcgggatgtcgaagctccaccacctgattctgaacaacaaccagctggtaatgatccac
cagggagcattcaatgacctgctggcactggaagaattggacctcagttacaacaacctg
gactcaattccttgggaggccatccagaaaatgatcagcctccatacgttgagtttagac
cacaacatgttggactttattccagagggaaccttttccctgctgcagaagctcaaccgg
ctggacgtaacctccaataaactccaaaagttgccgccagatcctctttttcaacgagca
caggttctggccacatcagggatcatgacctcctcatcttttgcgctgtcatttggtgga
aaccctctccactgtaactgtgagttactctggctgcgaaggctgtacagagaggacgac
ttggagacgtgcgcctcgccccaacacctctctggccgctacttctggtccattcccgag
gaggagttcctctgtgaacccccgctcatcaccagatactcccatgagatgagggtcctc
gaaggccagagggttgcactcaggtgcaaggcaaggggtgacccagagccagccatccac
tggatctctcctgagggcaaactggtatcgaactcctccagaacattggtctacaccaac
ggtactctcgacatcctcatcagtactgtgaaagataccggctccttcacctgtatctcc
tccaaccctgccggtgaagcccaccaaactatagaccttgttattattaaactcccgcat
atcaccaacaacaccaacaacatccaggagcctgacccaggatcatcagacatttccacg
tcaacccgtggcggggccaacggaaacaacgtgacgggcgatgtgaagggtggggtggat
aagagggtggtgacggctgaggctacatcctcgacggcactaatcaagttcaacttccag
aggactattccgggcattcgcatgttccagatacagtacaacgggagccaggatgactca
cttgtgtacagaatgatccccccatcaagcaagaacttcctggtcaacaacctagcagca
gggacccagtacgacctctgcgtgctggccatctacgacgatgtcattacctcgctgaca
gcaacccgtgtggtcggctgtgtgcagttcagcactgagtcagagtacatgaggtgtcat
tttatgcagtctcagttcctcggcgggactatgatcatcatcattggagggataatagtg
gcctctgtgctcgtgttcatcatcatcctgatgatacggtacaaggtgtgtaaccctggt
gagggtggtaaaggcgtttcaatgtcgatgaccaacgttcactcacagaccaatgggcag
cagtcacagggatgcactgtgactcctagcgcctctaaacacggctcaatcggattagaa
gaccactcaggtggctcaaagaagagaggcggaggagcaggaggagggggcaaggattcg
attactcagtcgtccgaatcttccctgcctgactgctccacaaccacgtcggtactcagt
cagccttggtcagccagaagcccgacaggtggatccgaggagaaagcgggtgaagaaagg
gggtctttggcagcggagagagctcaagctggcatctcatcacccaccgccaccggtacg
ctgaccaagccaaagcgcaaacccactccgaataagccaggctctgcttgctccaactcc
tcggccaccccagaaaatctcgcctcctcctcccctcgccctccaacctcctcctctacc
gcctcttctgctctcctcccttcttccatccctctggagaacctcaacaccaaccgcaac
aactccacctctctcaaccaaaccccccctcctcctttcagtccttcctgtttctccacc
ccttttgccaccccgagccctgtgccctccatccaattcagagagacgcccatcctgcgc
cgagctcctcgcacctcctcctcttcctccgccaagtaccagactctcccagtggaggag
ggagggaggagtagggcgaggaggaggtattccctcagtgaaggaggctcaacaaagact
cacttgccccatcaaggaggaggcggagcacccaaattagggcgcataatgcgaaacaag
aggagccaatcagtgagtgggatgctactccccaaagaggaggatggagacacggacaaa
gggcggtgtgactctgattggatcttagaaagcacggtttaa
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