Scomber scombrus (Atlantic mackerel): 134000790
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Entry
134000790 CDS
T10651
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
134000790 (scaf8)
03041 Spliceosome [BR:
ssco03041
]
134000790 (scaf8)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134000790 (scaf8)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
134000790 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
134000790
NCBI-ProteinID:
XP_062296257
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All DBs
Position
19:complement(18551074..18577238)
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AA seq
1412 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVVDSIVRQSRHQFGTEKDVFAPRFSKNIIMTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQDSIFGQENSVSSAQGSSQSQLPDSE
NKLDDSIDNQQQDMDLDEGPDGMEEEIFEAEEKKTVSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGIIDQETVNDEWE
AAKNAEPAKEVSSQQVIAETTAASNTQNETYNQQVTMMPVQLPVAQAVSSAVGLVPPSFP
VSMGIPPPGYGPPPPFIRAGFNTSQPPPGFMQAAQTAAMASAPSLQPSVATSQEAIKESP
FSAMIPPTSIPGSFMPSAIPGAGVFNPVGMQTQQAGSEKMPQSADGMDAAAELTLQGMQN
AVRSGMGLLGMHPTASLTHPLHQSGLTGQRMPGLLPMDVRPNLLQPGAAARFPLLMQQSP
AQQAAVLLDSSLQAQARARAPFSQLDPFNRAPNLTNEHVSKTEEESSSGADEGKDQDYRF
PPMEKQSTGLLRTPPPEQRDALGGGGGGRPALLQTPGTQPTRGSLLGRLQALAGFTPDSR
WSQTRGDFDERDSMRGGPQAPAVPKGFQEERSTAGQNYPNRFDNRPGTAAGAAGPAANAG
AVGGPQAWNRSGAGATAPFDSELHQDLDERRRPWDRQRDRDERDFDFRREMNGNRHSRER
ERERERDRERDRERGRDRPREHERDRDRDKERDRERERERGGWTPLLPLPTPLLPTPPLN
PNLSQNQGKMLAPLKLNPQMQARFQSPLLPQAQAKPPLLGLNQPLPQVQIKSPPPSQNQA
AVPEPQPETPTLSETLQVQSPPSAQSPSDSKSQSLLPEAFTEAQSSPQLETPHTESPSLP
AAQSPSKTITSPDTETPSQASPLVEASSQDSPVAFTQAASPPEETTHSVEEQESPQEEEE
EESQENASSPQPLWVNGSGMDNSTVSEPTPEASPEPTPDPSSDSLLPESEAEQQQEQQQL
ASPKDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaacgagctgtactcgttgaatgagtacaagccgccc
atctccaaggccaagatgacccagatcacaaagtctggaatcaaggctataaaattctac
aagcatgttgtccagagtgtggagaaattcatacaaaagtgcaaaccagaatacaaggtc
ccaggcctgtacgtcgtcgactccattgtcagacagtcgcgacaccagtttggcacagag
aaggatgtttttgccccacgcttcagcaagaatatcatcatgacgttccagcacctctac
cgctgcccctcagatgataagagtaagatagtacgagtcttgaatctgtggcagaagaat
gctgtcttcaagagtgacatcatccagcctctgttggacatggctgcagggattcctcca
cctagcgtcacccccgtcatgcccagcagcgctgccccagtcaataacactacacctggc
acaccggccaccccggcaaccccagctaacatagtccagggtctgcctgactgggcttcc
cagattaccaacacagacactgtggctgctgtggcacagatcctacagagtccccaggga
caacagcttcagcagctggtacagagtctgcagatgcagcagcagaagcctcagccatcc
ctgctgcaggccttggacgctggcctggtggttcagttgcaagctctgacagctcagctt
actgcagctgctactgccaacagcctcaaccccctggaacagagggtctcctcttttaat
aagaaactattgggtccgtttgactttgggaatgattctgaacgtggtgaagaatctaaa
aaggactcctcgtcgtctcagctgcccatggtgtcagagcccataaacagctcattattc
caccagctagctgagcagctacaacagcagaacctggagcagtttcaaaagcaactgctg
gagcaccagcagcaccagcagaaggctatgagcatagaagggcaagattctatctttgga
caagagaactctgtttcaagtgctcagggcagcagccagtcacagcttcctgactctgag
aacaagctggacgactccatagataaccaacagcaggacatggatctggatgagggtcca
gatggaatggaggaagagatctttgaggcggaggagaagaagacggtcagcacacgctcc
agaacacgctctagatcacgctccaggtctcccaaaaggagaaggtccaggtcccgctct
ggctctcggaaacgtaagcaccgtaagcggtcacgctcacgctccagagatcgcaagagg
aagtcttcacgatcatactcaagtgaaagacgcgcccgagagcgagagaaggaacggcag
aagaaaggactgcctcctatacgatcgaagactctaagtgtgtgcagtacaacgctttgg
gtgggccaagtggacaaaaaggcgactcagcaagacctcaccaacctgtttgaagagttt
ggccagatagagtctataaatatgatcccccccagaggctgtgcctacatctgtatggtc
cacagacaggatgcgtaccgcgcccgccagaagctaagcactggctcctttaaaattggc
tccaagatcatcaagatcgcatgggctctaaacaagggggtaaagcaggaatacaagcag
ttttgggacgttgaccttggtgtcacatacataccttgggagaaagtgaaactggatgac
ctggatggctttgctgaaggaggaatcattgaccaggagaccgtcaacgatgagtgggaa
gcagccaagaatgctgagccagcaaaggaggtttcgagccagcaagtaatcgctgagact
acagcagcatccaacacccagaatgagacgtataaccagcaggtcaccatgatgcccgtg
cagctgccagtggcccaggctgtttccagtgcagtgggtttggtgcctccttccttccct
gtcagcatgggcatacccccaccaggctacgggccaccaccacccttcataagagctggt
ttcaacacctcacagcctcctccaggttttatgcaggcagcacaaactgcagccatggct
tcagcaccttctttgcaaccttcagtggcaaccagccaggaagctatcaaggaatcacca
ttcagtgctatgatccctccgacgagtatccctggcagcttcatgccctcagccatccct
ggagccggtgtgtttaacccagtcggaatgcaaactcagcaggccggcagtgagaaaatg
ccacagtctgctgatggtatggatgctgctgcagagcttacactacaaggcatgcagaat
gcagtccgcagcggaatgggtcttcttggcatgcaccccactgcctccctcacccaccca
ctgcaccagtctggtctgactggtcagagaatgcctggactgttgccaatggatgtgcgt
cctaacctcctccagcctggagctgccgcacgtttcccactcttaatgcagcagagcccc
gcccagcaggctgctgtacttctcgacagctccctccaagctcaagcccgcgccagggcc
cccttttcccagttagacccctttaacagagcccccaaccttaccaatgaacatgtctct
aagacagaagaggagtcttcttctggtgctgatgagggcaaagaccaggactaccgcttc
cccccaatggaaaaacagagcacaggcctgctgaggacccctccgccagagcaaagggat
gcccttggaggtggtggaggaggcaggcctgccttgctccaaactccaggaactcagccc
accagaggcagcctgctgggacgtctccaggctcttgcaggctttactcctgatagccga
tggagccagaccagaggggactttgatgagcgagacagcatgcgaggaggtccacaggct
ccagcagttccgaaaggcttccaggaggagcgctccacagcagggcagaactatcccaac
cgctttgataaccgtcctgggacagcagcaggagcagctgggcctgctgcaaatgctgga
gctgttggggggccgcaggcctggaaccgtagtggtgctggtgccacagcaccttttgac
agtgaactacatcaagacctagatgaacgaagacgcccatgggacaggcagagagacaga
gacgaaagagatttcgacttcaggagggagatgaatggaaaccgccacagccgtgagaga
gagcgtgagagggaacgcgacagggagagagacagggagcgaggccgagatcgtcccaga
gagcacgaacgcgacagagaccgtgacaaagagagagatcgtgagagggagcgcgaacgc
gggggctggacacctcttctccctctaccaacacctctgcttccaactccacctcttaat
cccaacctgtcccagaaccaaggcaaaatgctcgccccgctcaaattgaaccctcagatg
caggcacgattccagtccccacttctgccccaagctcaggccaaacctcctctcttaggt
ctgaatcagcctctgccgcaggttcagattaagtctccacctccatcacagaaccaagca
gctgtgcccgagccccagccagaaacccccactctgtctgagacacttcaggtgcagtca
cccccctcagcccaatccccatctgacagcaagagtcagagcctgttgcctgaggctttc
actgaggcccagtcatcaccacaactcgagaccccacacacagagtcaccgtccctgccc
gctgcccagtccccctccaagaccatcacttccccagacactgagaccccaagccaagcc
tcaccacttgttgaggcttcatcccaggactcacctgtggccttcacacaagctgccagc
ccccctgaagaaactactcactctgtggaggagcaggagagcccacaggaggaggaagag
gaggaatcacaagagaacgcctcctcaccccaacctctctgggtcaatggatctggcatg
gacaatagcactgtgtctgagcccacacccgaggcctctcctgaaccaactccagacccc
tcctccgactccctgctccctgaaagtgaagcagagcagcagcaggagcagcagcagctt
gcctctcctaaggacgtagacaatgaacagagtgagcccatggaggaagctgcaagtcag
ccagtggtagacactgtcacagacactgaggggacataa
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