KEGG   Scomber scombrus (Atlantic mackerel): 134000815
Entry
134000815         CDS       T10651                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082  ATP-dependent chromatin remodeling
ssco03083  Polycomb repressive complex
ssco04110  Cell cycle
ssco04330  Notch signaling pathway
ssco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    134000815
   03083 Polycomb repressive complex
    134000815
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    134000815
   04350 TGF-beta signaling pathway
    134000815
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    134000815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssco03036]
    134000815
Enzymes [BR:ssco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     134000815
Chromosome and associated proteins [BR:ssco03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     134000815
   HDAC complexes
    Sin3A-HDAC complex
     134000815
    BRAF-HDAC complex
     134000815
    REST complex
     134000815
    SHIP complex
     134000815
    MiDAC complex
     134000815
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     134000815
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    134000815
  Chromatin remodeling factors
   NuRD complex
    134000815
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 134000815
NCBI-ProteinID: XP_062296286
LinkDB
Position
19:complement(19151277..19156973)
AA seq 490 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKAKRAKTEGEKEGEEKEKKGEEEKKEVKEEEKVPEEEKMDT
SKPKEESKTP
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcgcttacttctcaaggaacaaagaaaaaagtttgctactactatgatggtgatgtt
ggaaattattactatggtcaaggccatcccatgaaacctcaccgaatccgcatgacgcac
aacttgttgctcaactatggcctctacagaaagatggagatatatcgtccacacaaagcc
agcggagaggagatgaccaagtatcacagtgatgattacattaagttcctgcgttccatc
cggccagacaacatgtcagagtacagcaaacagatgcagagatttaatgtgggggaggat
tgtccggtgtttgatggtttatttgagttctgccagctctcaggagggggctccgttgct
ggtgcggtgaagttgaacaaacagcagacagacatagccattaactgggctggaggtctg
catcacgccaagaagtctgaggcctctgggttttgctatgtcaacgacatcgtattggct
attctggagttactgaaataccaccagagagttctgtacattgatatcgacatccatcat
ggagacggtgtggaggaggccttctacaccaccgaccgtgtcatgacagtttccttccac
aagtatggagagtacttccccggcactggtgacctgagggatattggagctgggaagggt
aaatactatgctgtgaattacccactgagggatgggattgacgatgagtcatatgaagcc
atattcaagcctatcatggccaaagtgatggagatgtaccagcccagtgcagtggttctg
cagtgtggagctgattccctgtccggagatagacttggctgctttaacctcaccattaaa
ggtcatgccaagtgtgtggagtacatgaaaagcttcaacctgccactactaatgctgggt
ggaggaggctacaccatccgcaatgtggcgcgctgctggacatacgagactgctgtagct
cttgatacctcaatccccaatgagctcccatacaacgactactttgagtactttggacca
gacttcaaactgcacatcagcccctccaacatgaccaaccagaacaccaatgactacctg
gagaagattaagcagcgtttgtttgagaacttgcgtatgctgccccatgctcctggagtg
cagatgcaggccatcccagaggacgccgtacaggaggacagtggagacgaggaagaggac
gaccctaacaaacgcatctccatccgcgctcatgacaagaggatagcgtgtgaggaggaa
ttctctgactctgaggatgaaggcgaaggaggacgcagaaacgcagccagcttcaagaaa
gccaagcgagccaagaccgaaggagagaaagagggagaagaaaaggagaagaaaggtgag
gaggaaaagaaagaagtaaaagaggaagaaaaggtcccagaggaggagaaaatggacacc
tcaaagccaaaagaggagtccaagacaccttga

DBGET integrated database retrieval system