| Entry |
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| Symbol |
pnn
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| Name |
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| KO |
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| Organism |
ssco Scomber scombrus (Atlantic mackerel)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ssco00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134000967 (pnn)
03015 mRNA surveillance pathway
134000967 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ssco03019]
134000967 (pnn)
03041 Spliceosome [BR:ssco03041]
134000967 (pnn)
Messenger RNA biogenesis [BR:ssco03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134000967 (pnn)
Spliceosome [BR:ssco03041]
Complex C
Other components
EJC/TREX
134000967 (pnn)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
19:21405551..21410985
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| AA seq |
690 aa
MAVVVRSLQDQIEKAKESLKNVDDNIRKLTGRDPNESRPGQIRRPGGPTAGPGGGGRGRG
IHLLRRSLSDIGSAGPPAKQRDIEGALLRLAGDQRARRDARHDSDAEDDDDVKKPALQSS
VVATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVSTEKQKRRTEIEQ
KLEVQAEVEKKKVENEKRELFEERRSKQTELRLLEQKVELAQLQEEWTSHNNRLVKYVRT
KTKPHIFYLPGKMCSATQKLLDDSTKKLNAVFDERREAFAEHLSKMESRPRRQPNRDQDG
NTAATGTDHSAEGKPAGQVVKVTGNKRDAEMEEDEEEDDEEEEREKEGDRKVEEKEDGLK
KIEEEVEGMEVSVGGVEEEEEEGVKKEGEEGVKNREEQRDKDKEAGPGSEEMEVEVKGGA
EKENRSKIEEGETDRKEGPTDPQNEKTPDPQSSEATVTIQEAPTNTSQQTQPSPTLTPGE
PGVKPSETQGASPTPEPQTASITPGQDLITSGLVVQDSAAENQGAEGKTGDEAPQKPQTD
TQEAHSVTPAPSNNKEDSNSRGRKKQKEPKKGRSNSSSSSSSGSSSSGSSSSSSGSSRSS
SSSSSSSSSSSKSSSRSRSRDNGKRKRRSSGRDRKKGEERSHRKRGGSGGEGRDSKGSKE
RRKRRSDEGRGRSSRSDREHKDRDRKDKRR |
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| NT seq |
2073 nt +upstreamnt +downstreamnt
atggcggtggtagtgcggagcttgcaggaccagatcgaaaaagcaaaagaaagcttaaaa
aacgtagacgataatattcgtaaactaaccggacgagatcctaatgaatcaagaccgggt
cagatacgtcggcccggcggccccacagccggccccggaggaggaggcagaggcagagga
attcacctgctcaggcgtagtctctcagacattggaagcgccggcccccctgccaagcag
agggacatcgagggagccctgctaaggctggcaggggaccagagggccaggagagacgcg
cgtcacgacagcgacgccgaggacgatgacgatgtcaaaaagccggcgttgcagtcgtct
gtagtagctacctccaaggagcgaacacgccgagacctcattcaagaccagaccatggat
gagaggggaaaacagaggaatcggcgtatgtttggcctgctgatggggaccctgcaaaag
ttcaaacaggagtccaacgtctctacagagaagcaaaagcgacgtacagagattgagcag
aagctcgaggttcaggctgaggttgagaaaaagaaagtggagaatgaaaagagggagctg
tttgaggagaggagatccaaacagactgagctgaggttactggagcagaaagtcgaatta
gctcagctgcaagaagagtggaccagccacaacaaccgtctggtgaaatacgttcgcacc
aagaccaagcctcacatcttctacctgcctggaaaaatgtgctctgccactcagaaactc
ctcgacgactccaccaagaaactaaacgctgtgtttgatgagaggcgcgaggcgtttgct
gaacacctcagcaagatggagtctcgcccccggcgacagccaaaccgcgaccaggacgga
aacacagcggcaacggggacggaccactcggcagagggtaagccagcaggtcaggtagtc
aaggtgacaggtaacaagcgggacgcagagatggaggaagacgaggaggaagatgacgag
gaggaggaaagggaaaaggagggggatagaaaggtggaagagaaggaggacgggttaaag
aagatagaggaggaggtggaggggatggaggttagcgtggggggggttgaggaggaggag
gaggagggggtaaagaaggagggagaggagggggtaaagaacagggaggagcagagggac
aaagataaggaggcaggtccagggtcagaggagatggaggtggaggttaaggggggggca
gagaaggagaacaggagcaagatagaggagggagaaacagacagaaaagaagggcccaca
gacccccaaaatgaaaagaccccggacccccagtcctctgaagcaaccgtaaccatccaa
gaagcccccaccaacaccagtcagcagacccagcctagccccaccctaaccccaggggaa
ccaggagtaaagccctctgagacccagggggcctctccaaccccagaaccccaaacagcc
tccatcacacccgggcaggatttgatcacaagtggcctcgtggtgcaagattcagctgca
gagaaccagggagcagaagggaaaacgggggatgaagcaccccaaaaacctcaaaccgat
acccaagaggcccacagcgtgacccccgccccctctaataataaggaggacagcaacagc
agaggaaggaagaaacaaaaggagccgaagaagggccgcagcaacagctcctcctcttcc
tcctccggctcctcctccagcgggagctcgtcctcctcctcaggatccagccgctcctct
tcctcctcctcctcctcttcctcgtcgtcgtccaagagcagcagccggagccgcagccgg
gacaacggcaagcgcaaacggaggtcgtcaggccgagacaggaagaaaggagaagagagg
agccaccgtaagagaggggggagtggcggagaagggagggactcgaaaggatccaaggag
aggaggaagaggaggagcgacgaagggaggggcaggtcttcccggagcgatagggagcat
aaagatagagacaggaaggacaaaagacgttaa |
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