Scomber scombrus (Atlantic mackerel): 134000973
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Entry
134000973 CDS
T10651
Symbol
ptafr
Name
(RefSeq) platelet-activating factor receptor
KO
K04279
platelet-activating factor receptor
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04020
Calcium signaling pathway
ssco04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
134000973 (ptafr)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
134000973 (ptafr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ssco04030
]
134000973 (ptafr)
G protein-coupled receptors [BR:
ssco04030
]
Rhodopsin family
Others
Platelet activating factor
134000973 (ptafr)
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GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srx
Gaa1
MscL
Motif
Other DBs
NCBI-GeneID:
134000973
NCBI-ProteinID:
XP_062296485
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Position
19:11746758..11750788
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AA seq
371 aa
AA seq
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MSSAGNDSSFLDSEFRYQLFPAIYGIIFILGLFANSYVLFVLHSLRDARAMSEIRIYMTN
LTIADLLFVCALPFWIGYYSRNGNWVFTDFMCRLTGSFFFINTYCSILFLTAISVNRYWA
VTKPLDVASSDHRRRGIIVSAVIWVVIVAMAVPFLVSKGINEDKKVTRCFEGYHNQTDAE
KKMVAVTHFAIIGLFSVVFVLVVVCNLLIALSLLSQTPPVSGTTTSRKSNRTQSSSSKKP
VGVKRRALQLLIAVVGVFVLCFLPHHVVQGFWTLAVLQIREGWGHVDWDQKTLQALNDAH
QITLLLMGLNCILDPVVYYFSTKRFRRFIMAHFKKLSKGDGCSHTVVTEMSMDSRNHSQR
LQSGHKKPDMD
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagctggtaatgactcaagctttctggactctgagtttcgttatcaactcttc
ccggccatctatggcatcatcttcatcctgggcctcttcgctaattcctacgttctgttt
gtcctacactctctgcgtgacgccagggccatgagtgaaatccgcatctacatgaccaac
ttgaccatcgctgatctcctgtttgtgtgtgcccttcctttctggattggctattacagt
cgcaacggtaactgggtcttcacagacttcatgtgccggctgacaggctcgtttttcttc
atcaatacctactgctccatcctcttcctcacagccattagcgtcaacagatactgggca
gtcaccaagcctctggatgtggcctcttcagaccacaggcgccgtgggatcatcgtgtct
gctgtcatctgggtggtgatcgtggcaatggctgttccatttctggtgtcaaaaggtatc
aatgaagataagaaagtcactcgctgtttcgaggggtaccacaatcaaactgatgcagag
aagaaaatggtggctgtcacacattttgcaataattggattgttttctgtagtttttgtt
cttgtcgttgtgtgcaatctccttattgccctatccctactttctcaaacgcctcctgtg
tctggaacaactacatccagaaagtccaacaggacccagtcttcctcatctaaaaagcct
gtgggggtgaaacggagggctctgcagttgttgatagcagtcgtgggagtgtttgttctg
tgcttcctgcctcaccatgtcgttcaaggcttttggacactggcagtgttgcagatcaga
gagggctggggccacgtggactgggaccagaagactctgcaggcactcaacgacgcccat
cagatcaccctgcttcttatgggcctcaactgcattctagatcctgtggtttattatttt
tccacaaagaggtttaggaggtttatcatggctcactttaaaaagttatcaaagggagac
gggtgctcacacacggtcgtaacagagatgtccatggacagcaggaatcatagccagaga
ctacagagcgggcacaaaaagcctgatatggattaa
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