Scomber scombrus (Atlantic mackerel): 134001005
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Entry
134001005 CDS
T10651
Symbol
arid4a
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 4A
KO
K19194
AT-rich interactive domain-containing protein 4A
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
134001005 (arid4a)
03036 Chromosome and associated proteins [BR:
ssco03036
]
134001005 (arid4a)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
ARID
134001005 (arid4a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
134001005 (arid4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBB1NT
ARID
Tudor-knot
MSL3_chromo-like
Tudor_2
Motif
Other DBs
NCBI-GeneID:
134001005
NCBI-ProteinID:
XP_062296524
LinkDB
All DBs
Position
19:complement(324588..335349)
Genome browser
AA seq
1481 aa
AA seq
DB search
MKAADEPAYLSVGTDVSAKYRGAFCEAKIKTVKRMVKVKVNLKGDSTSQVVQDDQVKGPL
RVGSTVEVKTNEGLSSEAVISKLTDASLYTVVFDDGDEKTLRRTSLCLKGERHFAESETL
DQLPLTNPEHFGTPVIGKKSNRGGRRSAQAVADEENESSSSEDEEEDRRRLNDELLGKVC
SIESDEEPSNWFLALVVSPSCNDELVVKKDQCLVRSFGDSKFHTVARRHVHIVNNISLNK
SEFTHRRGFEAARVFLRSKDVPDVWMMDMSQILDSSSSDDEDDEEEKESEEEDDEDEKKK
KQKHIKEEPEEEQDPEERDHFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYQQG
GCRKIESGTVWKQIYMDLGIPVLNSAASYNVKTAYRKYLYGFEEYCRSASITFRTIHHNN
PRPPSTPANQKPAEPKESPSPPMKAEPEDDDKAEEAESESESEKEEVKEAQSSPRGRRRC
VRPEREPPSRPEKRGGGGEENSEEQREVRRRSNRRMDDSERGSEDEEDDDDEEDDEESER
RRMDRSDDDEDADSVAGTKVRVKYGKGKTQKIYEAHIKKTDNDNGEQFYLVHYYGWNVRY
DEWVKADRIIWPVEKGTKKRQRKKVKQNKDKDEPDKDDEKPTMAPLKPPGAKRGRPQIRT
PPTSSAGRSVSNTPSSEGRSNGKSSKAETPPSMSNGDNTPRRRTRRTSGMYDSDRASNED
SGNSSEDSESEDPPDKKPSPWRGRSEAPPTQEEEVKEEEEEEEEEEEEEEEEEEEEEEEQ
QQSEVINVPPPPNNNAVTPATTGQPPAPPAPPCPSIPQETADKALSQSEKREAEQGEEPV
EEAAMLPVPLETEDKTSPVPKTPPVPKTPPVPKTPPVPKTPPVPKTPPVPKTSPVPKTSP
VPKTPPVLKTPPVPKTPPVPKTPPVPKTPPVPEKPQEVLTKTSPSKMLALPPLLPLPPVP
EKPPSSSPSTDVAVDDNSRPTPLSSPRAKGRRTILREARSDTPPRLSLCMPSPAPPAAGS
PPHPALSSSPRGVLKRQDEPMVLLHCLPPPRLAADSDTDSASEEEEVGEAEGVGLTEERG
GAPLKRKAAEQRAPEKKLRPDRRSEELKPASPKMAAGASPKPLPSPLQRNDTPAKAEETP
REATEERLKEPEVHAGTPPRPVEALGPAPIGPAPQGPAPPEEPQMDPEALVCHEVDLDDL
DEKEKPTAAAAVAAEHLLLMMRDQPAPHLLLASPHAPLLPQPQVRPFLPSAPPCPEELRP
ARSTEEERGGEPAGDADSSPGFDGSTSSTSTCTSSCTSSSTSLLGLQKKTDRGQKRVMDC
NLSPSAKKPKRNQKRPNTPGKVEKNGAGHSSDSEDQSRVSLSKSQQKSRCPSLSSPSHKD
KQNFPSPQQRTYKWTFQLDDLDSMSSTERISFLQEKLQEIRKYYLSLKSEVASIDRRRKR
LKKKEREVSNTTASTSSGSSDTGMSPSSASPTQNSVAVECR
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcagcagacgagcctgcctacctgtcagtagggacggatgtcagtgcgaagtac
agaggagcgttctgcgaggccaaaataaagactgttaaacggatggtgaaagtcaaggtc
aatctgaaaggtgacagcacgtctcaggtggttcaagatgaccaggtcaaaggacctctg
agggttggctccactgtggaagtgaagactaacgagggtttatccagcgaggccgtcatc
agtaaactgacagacgccagcctctatactgttgtgttcgatgacggagacgagaagacg
ctgcgtcgtacatctttgtgtctgaagggcgagcgccacttcgcagagagcgagactttg
gaccagctgccgctgaccaaccccgaacatttcggcacaccggtcatcggcaagaagtcg
aaccgcggcgggcggcgttcggctcaggctgtcgctgacgaggagaacgagtcttcgtcc
agtgaggatgaggaagaggatcggaggagactcaacgatgagctgctggggaaagtctgc
agcatcgagagcgacgaggagccgagtaactggttcctggctctggtggtgtctcccagc
tgtaacgatgagttggtggtgaagaaggatcagtgtctcgtcagatcttttggagactca
aagtttcacacggtggcgaggagacacgttcacatcgtcaacaacatcagcctcaacaag
tctgagttcacccacaggagaggttttgaggcggcccgggtcttcctgaggtctaaagac
gtcccggatgtctggatgatggacatgagtcagattctggactcgtcctccagcgatgac
gaagacgatgaagaggagaaggagagcgaggaggaagatgatgaagacgaaaagaagaag
aagcagaagcacataaaggaggagccggaggaggagcaggaccccgaggagagagaccac
ttcctgcagcagctgtacaagttcatggaggaccgagggacccccatcaacaagcctcct
gtcctgggctacaaagatctgaacctgttcaagctcttcagactcgtttatcagcaggga
ggctgccgcaagatcgagagcgggacggtgtggaagcagatctatatggacctggggatc
cccgtcctgaactctgctgcgtcctacaacgtcaagacggcctacaggaagtacctttac
ggtttcgaggagtactgccgctccgcgtccatcaccttcaggaccatccaccacaacaac
ccccgccccccctccacaccagccaatcagaagccagcagagcctaaagagtccccgtcg
ccgccgatgaaggcggagcccgaagacgatgacaaggcggaggaggcggagtcagagagc
gagagcgagaaggaggaggtgaaggaggcgcagtcgtccccgagggggaggaggaggtgt
gtgagaccggagagagagcctccctccagaccagagaagagaggaggaggaggagaagag
aacagcgaggagcagagggaggtgaggagacgcagcaacagacgaatggatgactcagag
agaggctctgaggatgaggaggatgatgacgatgaagaagacgacgaggagagtgagagg
aggagaatggacaggagcgacgatgacgaggacgccgactccgtggcggggacgaaggtg
agggtgaaatacggcaaaggaaaaactcagaagatctatgaagctcacatcaagaagacg
gacaacgataacggagagcagttctacctggttcactattacggctggaacgtcaggtac
gacgagtgggtgaaggccgaccgcatcatctggccggtggagaaaggaacgaagaagaga
cagaggaagaaggtaaagcagaacaaagacaaggacgaaccggacaaagacgacgagaag
ccgacaatggctccgttgaagcctccgggagcgaagcggggacgtcctcagatcaggacc
ccccccaccagctcggccggccgcagcgtctccaacacgccgagcagcgagggacggtcc
aacggcaagagcagcaaggccgagacgccgcccagcatgtccaacggagacaatactcct
cggaggagaaccagaagaacgtccggcatgtacgactccgaccgggcttcaaacgaggat
tctgggaactcgtcagaggacagcgaatcagaagacccgcctgacaaaaagccgtcgcca
tggcgaggaaggagtgaagccccgcccacccaggaggaggaggtgaaggaggaagaagag
gaggaggaggaggaagaagaagaagaagaggaagaagaagaagaagaagaggaggagcag
cagcagagtgaggtcattaatgtcccgcctcctcctaataacaatgctgtcaccccggca
acgacgggtcagccgcccgccccccccgccccaccgtgtcccagcatccctcaggagaca
gctgacaaagccttgagccaatcggagaagagggaggctgagcagggggaggagcctgtg
gaggaagccgccatgttgcctgttcccctggaaacggaggacaagacgtcgccagtcccg
aagacgccgccggtcccgaagacgccgccggtaccgaagacgccgccggtaccgaagacg
ccgccggtaccgaagacgccgccggtcccgaagacgtcgccggtcccgaagacgtcgccg
gtcccgaagactccgccggtcctaaagacgccgccggtaccgaagacgccgccggtcccg
aagacgccaccggtaccgaagacgccgccggtcccagagaaaccacaggaagtgctcacc
aagacgtctcccagcaaaatgctggctcttcctcctcttcttccacttcctcccgtccct
gagaagccgccgtcgtcctcaccgtccactgacgtcgcagtggacgacaacagcaggccc
actcctctgtcctcccccagggccaaaggtcgccggactatcctgagggaggcgaggtct
gacactcctcccagactctccctctgcatgccaagccccgccccccctgctgccggcagc
cccccccacccggcgctgtcgtcttctcctcgtggcgtcctgaagcgacaggacgagccc
atggtgctcctccactgcctccccccgccacgcctcgcggctgactccgacaccgattcc
gcctccgaagaggaggaggtgggggaggcggagggggtggggctgacagaggagcgagga
ggcgcaccgctcaaacggaaggcggcggagcagcgagcaccggagaagaagctccgccct
gacagaaggtcagaggagctcaaacccgcctcgcctaagatggctgccggggcgtccccc
aagcccctcccctcaccgctgcagaggaacgacacgcctgccaaggccgaggaaacgccg
agagaagcgacagaggagcgtctgaaggagccggaggtgcatgctgggacgcccccccgg
cctgtggaggccctgggccccgcccccataggccccgcccctcagggccccgcccccccc
gaggagccccagatggacccagaggcgctggtctgccacgaggtcgacctggacgacctg
gacgagaaggagaagcccaccgccgccgccgctgttgccgctgagcacctcctgctgatg
atgagggaccagccggccccccacctcctcctcgcctccccccacgcccccctcctcccc
cagccacaggtcagacccttcctcccctctgcccccccctgccccgaggagctccgcccc
gccaggagcacagaggaggagcgaggaggggagccggcaggagatgcagactccagcccc
gggttcgatggcagcacctcctccacctccacctgcacctcctcctgcacctcctcctcc
acctccctgctgggcctgcagaagaagacagacagaggtcagaagagggtgatggactgt
aacttgagtccgtcggcaaagaaaccgaaacgcaaccagaaacgaccgaatacgcccgga
aaggtggagaagaacggagcaggtcacagcagcgacagtgaggatcagtcccgggtgtct
ctgtctaaatctcagcagaagtctcgatgtccgtctctgtcgtctccgtctcacaaagac
aaacagaacttcccgtcgccgcagcaacgcacctacaagtggaccttccagctcgatgac
ttggacagcatgtccagcacagagaggatctccttcctgcaggagaagcttcaggagatc
aggaagtactacctgagcctgaagtctgaggtcgcgtccatcgaccgccgcaggaagcga
ctaaagaagaaggagagagaagtctctaacaccacagcttcgacctcttcgggctcctca
gacaccggtatgagtccgtcctcggcgtcgcctactcagaactcagtagctgtggagtgc
aggtga
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