Scomber scombrus (Atlantic mackerel): 134001006
Help
Entry
134001006 CDS
T10651
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 12-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134001006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134001006
NCBI-ProteinID:
XP_062296525
LinkDB
All DBs
Position
19:complement(241287..266319)
Genome browser
AA seq
1354 aa
AA seq
DB search
MDQCEDREEGVPPSKSSLCGEHDSQTKAQRMQQQRADSPEPSCVSMKSDRSMDHPFNFKD
GQPADGSIRMQQQRADSPEPSCVSMKSDWSMGCPIRFKDGQPADGRVQQQSSEVPSDQSA
QQHQTQLDSIFMLLEENIVTFVKNELKRVQRGLSPDYPECLERQSEDEEVLDGEEEEQRR
SSREAFLKITLHFLRRMKQEELAERLQSRTGAAKCRRKLKSNLEKKFQCLFEGIAKAGNP
TLLNQIYTPLYITEGGTAEVNDEHEIRQIETASRKPDRPETTIRQEDIFKASPGRDEPIR
TVMTKGVAGIGKTVLTQKFTLDWAEDKANQDIHFTFPFTFRELNVLKEKKYSLVELVHHF
FTETKEAGICRFEEFQVVFIFDGLDECRLPLDFHNTEILTDVTESTSVDVLLTNLIRGKL
LPSARLWITTRPAAANQIPPECVGMVTEVRGFTDPQKEEYFRKRFRDEEQARTIISHIKT
SRSLHIMCHIPVFCWITATVLEDALKSKEGGELPKTLTEMYIHFLVLQSKLKKVKYEGGT
ETDPHWSPDSRKMIESLGKLAFEQLQKGNLIFYESELTECGIDIRAASVYSGVFTQVFKE
ERGLYQDKVFCFVHLSLQEFLAALHVHLTFIKSGVNLLAEKTSRWSKVFKDKPEPTRFYQ
SAVDEALKSPNGHLDLFLRFLLGLSLQTNQTLLRGLLTQTGSSSQTNQKTVEYIKKKISE
NLSAERSINLFHCLNELNDRSLVEEIQQYLRSGSLSTDKLSPAQWSALVFMLLSSEEDLD
VFDLKKYSASEEALLRLLPVVKASNKALLSGCKLSERSCAALSSVLSSQSSSLRDLDLSN
NNLQDSGVKQLSAGLESPHCGLKTLRLTVCNLSERSCAALSSVLSSQSSSLKDLDLSHNN
LQDSGVKQLSAGLESPHCGLETLRLTVCNLSERNCAALSSVLSSQSSRLRDLDLSHNNLQ
DSGVKQLSAGLESPHCGLETLRLSDCNLSERSCAALSSVLSSQPSSLRDLDLSNNDLQDS
GVKQLSAGLESPHCGLETLRLSGCNLPERSCAALSSVLSSQSSSLRDLDLSNNNLQDSGV
KQLSAGLESPHCGLKTLSLSACLITEEGCASLASALSSNPSHLRELDLSYNHPGDSGEKL
LSAGLEDPHWRLDTLRMDHGGLQRLKPGLRKYACELELDPNTMNRFLKLSDNNRKVTRVK
EHQSYPDHPDRFDSWPQLLCRNVLTGRCYWEVELRGRVYISVSYRRISRKGNSYDCRFGW
NDQSWSLDCSDGGYSVCHNKIKTSISSSSSSSSSSSSSVSNRVAVYVDCPASTLSFYRVS
SDTLIHLHTFNTTFTEPLYAGFGLWSGSMSLFPL
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggatcagtgtgaggacagagaggagggagtccctccctctaaaagctctctgtgtggg
gaacatgacagccagaccaaagctcagaggatgcagcagcagagagcagactctcctgaa
cccagctgtgtgtccatgaagagtgaccggtctatggatcatccttttaactttaaagat
ggacaacctgctgatggaagtatcaggatgcagcagcagagagcagactctcctgaaccc
agctgtgtgtccatgaagagtgactggtctatgggttgtcctattaggtttaaagatgga
caacctgctgatggaagagttcagcagcagagctcagaggttcccagtgatcagtctgca
cagcagcatcaaacacagctggactccatatttatgctgctggaggagaacatcgtcact
tttgtgaagaacgagctgaagagagtccagaggggtctgagtccagattacccagaatgc
ttagagagacagagtgaggatgaggaggtgttggacggtgaggaggaagagcagaggagg
agcagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggag
gagctggctgagcgtctgcagagcagaactggtgctgcaaagtgtcgacgtaaactcaag
tctaacctggagaagaagttccagtgtctgtttgaggggatcgctaaagcaggaaaccca
acccttctgaatcagatctacacaccgctctacatcacagagggagggactgcagaggtc
aatgatgaacatgagatcagacagattgaaacagcatccaggaaaccagacagaccagaa
acaacaatcagacaagaagacatctttaaagcctcacctggaagagatgaaccaatcaga
acagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaagttcact
ctggactgggctgaagacaaagccaaccaggacatacacttcacatttccattcactttc
agagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgttcatcacttc
tttactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatc
tttgacggtctggatgagtgtcgacttcctctggacttccacaacactgagatcctgact
gatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagggggaaactg
cttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcct
gagtgtgttggcatggtgacagaggtcagagggttcactgacccacagaaggaggagtac
ttcaggaagagattcagagatgaggagcaggccagaaccatcatctcccacatcaagaca
tcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagtt
ctggaagatgcgttgaaaagcaaagagggaggagagctgcccaagaccctgactgagatg
tacatccacttcctggtgcttcagtccaaactgaagaaggtcaagtatgaaggaggaact
gagacagatccacactggagtccagatagcaggaagatgattgagtctctgggaaaactg
gcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagagctgacagagtgt
ggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacaggtctttaaagag
gagcgagggctgtaccaggacaaggtgttctgcttcgtccatctgagccttcaggagttt
ctggctgctcttcatgtccatctgacattcatcaagtctggagtcaatctgcttgcagaa
aaaacatccaggtggtctaaagtctttaaagacaaacctgaaccaacacgtttctaccag
agtgctgtggacgaggccttaaagagtccaaatggacacctggacttgttcctccgcttc
ctcctgggtctctcactgcagaccaatcagactctcctacgaggtctgctgacacagaca
ggaagtagctcacagaccaatcagaaaacagtcgagtacatcaagaagaagatcagtgag
aatctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgatcgt
tctctagtggaggagatccaacagtacctgagatcaggaagtctctccacagataaactg
tctcctgctcagtggtcagctctggtcttcatgttactgtcatcagaagaagatctggac
gtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtg
gtcaaagcctccaacaaagctctgttgagtggctgtaagctctcagagagaagctgtgca
gctctgtcctcagttctcagctcccagtcctctagtctgagagatctggacctgagtaac
aacaacctgcaggattcaggagtgaagcagctttctgctggactggagagtccacactgt
ggactgaagactctcaggttgactgtctgtaacctctcagagagaagctgtgcagctctg
tcctcagttctcagctcccagtcctctagtctgaaagatctggacctgagtcacaacaac
ctgcaggattcaggagtgaagcagctttctgctggactggagagtccacactgtggactg
gaaactctcaggttgactgtctgtaacctctcagagagaaactgtgcagctctgtcctca
gttctcagctcccagtcctctagactgagagatctggacctgagtcacaacaacctgcag
gattcaggagtgaagcagctttctgctggactggagagtccacactgtggactggaaact
ctcaggttgagtgactgtaacctctcagagagaagctgtgcagctctgtcctcagttctc
agctcccagccctctagtcttagagatctggacctgagtaacaacgacctgcaggattca
ggagtgaagcagctttctgctggactggagagtccacactgtggactggaaactctcagg
ctgagtggctgtaacctcccagagagaagctgtgcagctctgtcctcagttctcagctcc
cagtcctctagtctgagagatctggacctgagtaacaacaacctgcaggattcaggagtg
aagcagctttctgctggactggagagtccacactgtggactgaagactctcagtctgtca
gcatgtctgatcacagaggaaggctgtgcttctctggcctcagctctgagctccaacccc
tcccatctgagagagctggacctgagctacaatcatccaggagactcaggagagaagctt
ctgtctgctggactggaggatccacactggagactggatactctcaggatggaccatggt
ggactgcagagactgaaacctggtctgaggaagtatgcctgtgaactggaactggatcca
aacacaatgaacagattcctcaaactgtctgataacaacaggaaggtgacacgtgtgaag
gagcatcagtcatatcctgatcatccagacagatttgactcctggcctcagctgctgtgt
agaaatgttctgactggtcgatgttactgggaggtcgagttgagaggaagagtttatata
tcagtgagttacagaagaatcagcaggaaaggaaacagttatgactgtaggtttggatgg
aatgatcagtcctggagtctggactgctcggatggtggttactctgtctgtcacaataag
ataaaaacatccatctcctcctcctcctcctcctcctcctcctcctcctcctctgtctct
aacagagtagcagtgtatgtggactgtcctgctagcactctgtccttctacagagtctcc
tctgacacactgatccacctccacaccttcaacaccacattcactgaacctctgtatgct
gggtttgggctctggtctggttcaatgtctctgtttcctctgtag
DBGET
integrated database retrieval system
