Scomber scombrus (Atlantic mackerel): 134001197
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Entry
134001197 CDS
T10651
Symbol
toporsa
Name
(RefSeq) topoisomerase I binding, arginine/serine-rich a
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134001197 (toporsa)
03036 Chromosome and associated proteins [BR:
ssco03036
]
134001197 (toporsa)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ssco03037
]
134001197 (toporsa)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134001197 (toporsa)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134001197 (toporsa)
UBL E3 ligases
134001197 (toporsa)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
134001197 (toporsa)
Cilium and associated proteins [BR:
ssco03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
134001197 (toporsa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
PWI_Topors
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-rbx1
zf-RING_5
RING_XB3-XBAT31
zf-ANAPC11
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
134001197
NCBI-ProteinID:
XP_062296753
LinkDB
All DBs
Position
2:21793943..21799731
Genome browser
AA seq
819 aa
AA seq
DB search
MSAIKIALQQSKKRDRRKTSEAMSEDVSPDSKCPICLDIFNNISYLDLCLHKFCFRCIHE
WSKNKAECPLCKQPFNSIYHSIKSEQDFKKYDLKPLDNGSFGSFEGVRFRYRTTLTGVHR
QMQRRTSPPPDNGVMFEASTNLPQHRQDRYIRRMMIRLAAKRRAASEGRAVNNVREQEMV
NFRRELYRRGVRVRNVRDGGRSRDTSAEFYRRNPACLHRLIPWLKRELVVLYGLHGSLVN
IVQHIIMSRITRYDMEEGPIQEELRPFLQGRTEHFLHEFISFAKSPFNMEAYDQHAVYDC
PAPSSNEDSSSNSSVIAISEDEENSVDLDPPGDSTSTLSHSVWDDETPGPSYSTTAEQSR
TERLSVPDSDTDSSLEEETQAFGVSPQQISPHDQTDLTQGEVNNKECLSSDTDDCLIVGF
VKPTADRTPELVQLSSDSDESASEDTKEVPHLPQHIRFTSLSPLASQSSDPGRSEYLEID
QYSQSDSKEGCRSVTSSRHKTSSKSERKNRDRHDTDRRYGNNSGSWERHWSKEIDHRRKR
RSRSAERRHSSRSPVISQSSKERGYSYSGGRDFTYSKCDSKYKRRDNNFSYNSPPHSYQS
YSHYSQERDESGLHYKERRSYYYSSRKYSDRHSYSRSRSHSRESYRQDRRHSRSRTNSSS
RSPSSKRRPHHDKPGGKRKYKTRHLEEPSKNTLSSSHPEGDSSTTHTKHSKKSKEKHHKK
SKERSRKGSRSLSVELVNEDNSCERSRRHHKKKKKHKKKSKRHKSHERTEKHSPTVITID
SDTDDFANDSITQASISNNLINNATDDPVDPTPLDSPLP
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctattaagatcgccctgcagcagagcaagaagagggacaggcggaaaacctct
gaagcaatgtctgaagatgtgtccccagactccaagtgtcccatctgtttggacatattt
aacaacatttcatacctggacctatgcctgcacaagttctgtttccgttgtattcacgaa
tggtccaagaacaaagctgagtgccctctctgcaaacagccatttaattcaatatatcac
agtataaagtcagagcaagactttaagaagtatgacctgaagccactagataatggctcc
tttgggtcttttgagggagtgcggtttagataccgcacaactcttactggggtacatcga
cagatgcagagaaggacctctcctcctccagacaatggagtcatgtttgaagcctcaaca
aaccttccccaacatcgacaggaccgttacatcaggcgcatgatgattaggttggcagcc
aagaggagagctgcaagtgaaggcagggcagtgaacaatgtcagagagcaagaaatggtc
aacttcaggagggaactgtaccgaagaggcgtgagggttaggaatgttcgggatggcggc
cgctctcgagacacctcggctgagttctaccgaagaaatcctgcctgcctccatagactt
atcccctggctaaaaagagaacttgtggtgctgtacgggctccatggctctttggtcaac
atagttcaacatatcattatgtctcgcattacacgttatgatatggaggagggacccatt
caggaagagctcaggccgttcctccagggacgcacagagcattttctgcatgagtttatc
agctttgcaaagtcccctttcaatatggaagcttatgaccagcatgccgtctatgactgc
ccagccccttcttccaatgaggacagcagctccaactcatctgtaatagctatctcagag
gatgaggaaaactctgtggatttggaccctccaggagactccacttctactctgagccac
tctgtgtgggatgatgagacgcctggaccgtcatattctacgacagcagagcagagcagg
acagagaggctgtcagttcctgactcagacacagacagcagtctagaggaggagacacaa
gcgtttggggtttctccacagcaaattagtcctcatgaccaaacagacttgactcagggt
gaagttaacaacaaggagtgtttgtcctctgatactgatgactgtttaattgtgggtttt
gttaagccaacagctgataggactcctgagctggtccagctctcctctgactctgatgag
tctgcaagtgaagatactaaagaagtgcctcatctacctcaacacatccgcttcaccagt
ctcagtcctctagcttcacagagtagcgatcctggacggtcagaatatctagaaattgac
caatatagtcagtcggattcaaaagaaggatgtagatctgtcacatctagcagacacaag
acatccagtaagtcagagagaaaaaacagagatcgccatgacacagacagaagatatggt
aataatagtggatcatgggagaggcactggtcaaaggaaatagatcataggagaaagagg
aggtcaagaagtgcagaacgcagacactctagcaggagcccagtgatctctcaaagtagt
aaagaaagaggttattcttactccggcggcagagatttcacctactcaaaatgtgacagc
aaatataaaagaagggacaataattttagctataactcgccaccacacagctatcagtca
tatagccattacagccaagaaagagatgagagtgggctgcattacaaagagagacggtcc
tactattacagtagccgaaagtactctgatcgacactcctattctcgctccaggagccac
agtagggaatcataccgacaagaccggaggcattctcgatcgaggactaattcgagcagt
cgctccccctcatcgaaaaggaggcctcatcatgacaagcccggtgggaagaggaaatac
aaaactagacatttggaggaaccttccaaaaacacgctttctagctctcaccctgagggc
gactcctcgacaacacatacaaaacacagtaaaaagagcaaagagaagcatcataaaaag
tccaaggagaggtcaaggaagggtagcaggagcctcagtgtggagctagtcaacgaggac
aattcctgtgaacgaagcagacgtcaccacaagaaaaagaagaaacacaagaagaaaagc
aaaaggcacaaaagccacgaacgcacagagaagcattcacccactgtcattaccattgat
agtgacactgatgattttgctaatgacagcattacccaggccagtatctctaacaacctc
atcaataatgccacagatgacccagtagaccccacccctctggactctccactgccataa
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