Scomber scombrus (Atlantic mackerel): 134001254
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Entry
134001254 CDS
T10651
Symbol
rab11fip5a
Name
(RefSeq) uncharacterized protein rab11fip5a
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
134001254 (rab11fip5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134001254 (rab11fip5a)
Membrane trafficking [BR:
ssco04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
134001254 (rab11fip5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
Motif
Other DBs
NCBI-GeneID:
134001254
NCBI-ProteinID:
XP_062296806
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All DBs
Position
19:complement(4744500..4779644)
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AA seq
1480 aa
AA seq
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MDTLSVDDDQRWVPTHVQVTVLKGRGLRGKGKHGTSDVYTIIQLGKEKYSTCVVEKTTEP
EWREECCFELQPGVLERGGRCAYPAGSNELILIVMHRALIGLDVFLGQAVIHLEKVFHES
RCLKNEWYRLNSKTGKKEKERGDIQVTVQFTRNNLTASMYDLVMKDKTGSTFRKLKDRIK
GKRRASEEDSSSAVVPSGYGSVYRMRQRMPSDGGGEEDYEDDEGGEARRSKMRNFFLRGK
LRKSSDTRSSTSLGSESSESSRGGSLSPTAGISVVVSDLSNSPSNSSNLTADNSPEHTAN
TSPRSSSLRCEFGDETGEITIAVPQPTVCVNGSHAYKVQHLDPGSGKPADSLGVGLLQKS
LPLSMSLQNLSPRADTDLPKGTVGDGRRWSFDKPGEEEKAAIAAALEQSGPMVGDEEECL
EQPAPPSSSSAESESQGKKQRRNLFSHGKSDSAGKRTSQSKDESEQAHAATEEKHRGWFG
SKDSHSKPSLVVSPKLEPSTDPHPPPLPPSHYPPGLPVDPSSLHHSNPFCHSQTTSPPMS
PCNPFFSLVQHNPFYEDMLTAQPLKPSLPPLPYLSSSRPPIALLFPQASKPNLTLTHDST
TTKDSITGSGTKSDVMVKVRKRPLPPTPVEKEKHLSKKLSNPFMSAGELEPDSEWDESFE
AFAAGRLQSPEDLTTDCKTQQNTPGGCPLEHCNNKGTSPPIADAHQITNVKDSLHQRPLG
ITLSSSTESSFEAHKATCVVTDTNTHHFDTFLQCLDTIPEYGSFEDHNKMFNTSANPPKL
DACFESFEANSTTNTNVLTDTNTHQSPFHAMALKLNSSSPDPGSSGLGSLAEDDFLSCFS
SSEKFSASSSDDAEAQNFSGFEISTESTMVNNLKQSESEDDVADRSKELSLVDVGEQTVI
QHWDDDKKIDLNTSEGALAPQSPVLTYQQPVITAKETESESRDNWTPNFSSVMYPDLLPK
LSSDSELLPKPDVSLQPDNENEEKAKDEAIVDFSEELNGSSVTANSDTDKMISSTPDDEL
CSTHPSLYIITSSPGVSQRLSDSPFESTSLGGQAANQHSLVPFRLLDDFLDTSHIESSPG
RDIKASDQNASSLLQSLYESPDSQYYQSCQSQPSSKCSNVSESEETLNSAYWTLCGELSE
SQTPADDALGPKDSSNGEINHTDQFEESLCGAEDKTTTLEPSFTIGEDLSLQLHPAAPID
SYMSCNPKPQPAVLDDMFSKSPQAQSATLHRSQSEGKLVTPFDELLVPSFGSDPCALKDL
SSARLRPDLPSLTSFAPFLTPDRSSSPLALCPLSSFANASAGSPPSVVRAAAPALANAKP
MPQETQQQQQQQQQQQAANQQNSPHPVKPLTTAMLADEKRTEGRSVLATGLEKLKSTIHP
GRSSQLSEQETERKKSLTEGAGSYYHLNHNELVALLVQRESEMERQKAEFKHQKALLAKR
EVELRKLKPQVRDLEDYIDTLLVRIMEQKPTLLQVRSKLK
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggacacgttaagcgtagacgacgatcagagatgggtaccgacacacgttcaggtgacg
gtgctaaaaggcaggggattacggggcaagggcaagcacggcaccagcgatgtgtacacc
atcatccagctggggaaggagaaatactcgacctgcgtggtggagaagactaccgagccg
gagtggagggaggagtgctgcttcgagctgcagcccggcgtgctggagagaggcgggcgg
tgcgcatacccggccgggagcaacgagctcatcctcatcgtgatgcaccgggctctgatc
gggctcgacgtgttcctcggacaggctgtgatccatctggaaaaggtgtttcacgagagt
agatgcctgaaaaacgagtggtacagactcaactccaagacggggaagaaggagaaggag
cgaggagacattcaagtcaccgtccagttcaccagaaacaacctgacagccagcatgtac
gacctggtcatgaaggacaagaccggatccacgttccgcaagctgaaagatcgcataaag
gggaagaggagagccagcgaagaggactcctcgtcggccgtcgtaccgagcggctacggg
tccgtgtaccgaatgcgccagcggatgcccagcgacggaggcggggaggaggattacgag
gacgacgaggggggcgaggcccgtcggagcaagatgaggaactttttcctgagagggaag
ctgaggaagtcgtcggacactcgttccagcacatcgctaggttcagagagcagcgagtcg
tctcggggagggagtctcagccccacagctggcatcagcgtggtggtctctgacctctcc
aactcgcccagtaacagcagtaacctgacagcagataacagtccagagcacacagcaaac
acatcacccaggtcgtcttctctcagatgtgagttcggtgatgagaccggtgagatcacc
atcgcagtgcctcagcccactgtgtgcgttaacggaagccatgcttacaaagtccaacac
ctggacccaggctcaggaaaacctgcagattctttaggcgtgggactgttgcagaagtcg
ttgcctctctccatgtctctacagaacctcagcccgcgagccgacacggacctccccaaa
ggcacggtcggagacggacgccgctggtcttttgacaagcccggcgaggaggagaaagct
gccatagcggcggccctggagcaaagcggacccatggtgggtgacgaagaggagtgcttg
gaacagcctgctcctccctcctcctcttcggcggagtcggagagtcaggggaaaaagcag
aggaggaacttgttctcccatgggaagagtgactctgcggggaaaaggacgagtcagtcc
aaggatgagtctgaacaggcccacgctgccactgaggagaaacacaggggatggttcgga
tcaaaggactcacacagcaaacctagcctggtggtgtcacctaaactagagcccagcact
gacccccaccctccacctctcccacctagtcactacccgccgggtctccctgtagatcct
tcctctctgcatcactctaaccccttctgtcactcacagaccacatcacctcccatgtcc
ccctgcaaccctttcttctctctcgtgcagcacaaccctttctatgaagacatgctaact
gctcagccactaaaaccttcgctgcctcctctgccctatctctccagctcccggcccccc
atagctctactctttccgcaggcgagtaagcctaacctcaccctgacccacgacagcaca
actacaaaggactccatcactggctctggtacaaagagtgacgtgatggtcaaagttagg
aaacgtccccttcctcctactcccgtggaaaaggagaaacatttaagcaagaagttgtcc
aacccttttatgtctgctggggagctggaaccggattcagagtgggacgaatcctttgaa
gcgtttgcagctggcaggctgcagtctcccgaggatctgaccacagattgcaaaacacag
caaaacacacccggtggctgtccactggagcactgcaataataaaggaacctcaccaccc
atagcagatgctcatcaaatcacaaatgtgaaggactcactacatcagcgacctttaggt
atcactttaagtagcagcacagaatcctcatttgaagcacataaagctacttgtgtggtg
accgacactaacacgcatcactttgacacatttctgcaatgtcttgacacaatcccagaa
tatgggagctttgaggatcacaataaaatgtttaacacttcagctaacccaccaaaactg
gatgcttgctttgaaagttttgaagctaacagcactactaacacaaacgttttaaccgac
actaacacgcatcaatccccgttccacgccatggctctaaaactcaacagcagctcccca
gatcctggttcttcgggtctcggcagtttagcagaagacgatttcctgtcctgcttctct
tcgtcagagaagttctcagcatcctcttcagacgacgccgaggcacagaacttctccggc
tttgagatatcaaccgagtcaaccatggtaaacaatctaaagcagtcagagtcagaagat
gacgttgccgacaggtctaaggagctgtctttagttgatgtaggggagcaaactgttatt
cagcactgggatgatgacaaaaagatagatttgaacacttcagaaggggccttggcacct
cagtcaccagtccttacatatcagcagcctgtgatcacagcaaaggagacagaaagtgaa
agcagagataattggacaccaaacttttccagtgtcatgtatcctgacctgctgccaaaa
ctctcttcagactcagagctactgccgaagcccgatgtctctttacagcctgacaatgaa
aatgaagagaaagccaaagatgaagctatagtggatttttcagaagagctaaatggttcc
tctgtaactgctaatagcgacacagataagatgatttcttccactccagatgatgaactc
tgctccactcatccatcactgtacatcataacctcctcccccggtgtcagccagcgtttg
tcagactcacccttcgagagcactagtttaggagggcaggctgccaaccagcactctctc
gtgccattcaggcttcttgatgatttccttgacaccagtcacatcgagagcagtcctggc
cgtgacataaaagcgtccgatcaaaacgccagcagccttctacaaagcttgtacgagagc
cccgactcgcagtattaccaaagctgccagtctcaaccatcctccaaatgctccaacgtc
tccgagtcggaggagacgctaaactctgcgtactggactctctgcggtgaattgagcgag
agtcagacacctgccgatgacgctttaggcccaaaagattcctctaatggagaaattaac
cacactgaccagtttgaagaatccctctgtggggcggaggacaagacaacaacactcgag
ccgagtttcacaataggggaagatttaagtttacaactacaccctgcagcaccaatagac
tcttacatgagctgtaatccaaaaccccagcctgctgtcttagatgatatgttctcaaaa
tccccgcaggcgcaaagtgctacactacaccgctcccagtctgagggcaagctggtgact
ccttttgacgaactcctagtgccctcctttgggagcgatccctgcgcactaaaggattta
tcctcagcccggctgcgccctgacctcccctctctgacctcctttgctccttttctaact
cctgatcgtagtagctctcctttagcgctctgccccctttcctcctttgccaatgcctcg
gcagggtcaccacccagcgtggtaagagccgccgcgccagctctcgccaatgcaaagcca
atgcctcaggagacgcaacagcagcagcagcagcagcagcagcagcaggcagccaatcag
cagaacagcccccacccagtgaagcccctgaccactgccatgctggctgacgagaagcgg
actgaaggccgatcagtgctggccaccggcctcgagaagctcaagtccaccatccatccg
gggaggagcagccagctcagcgagcaggagacggaaaggaagaagtctctgacagaagga
gcgggctcgtactaccacctcaaccacaacgaactggtcgccctgctggtgcagcgtgag
tcggagatggagaggcagaaggcggagttcaagcatcagaaagctctgctggccaagcgg
gaggtggagctgaggaagctgaagccgcaggtcagagatctggaggactacattgacacg
ctgctggttcgcatcatggagcagaaacccactctcctgcaagtgcgctccaagttgaag
tga
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