Scomber scombrus (Atlantic mackerel): 134001309
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Entry
134001309 CDS
T10651
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04148
Efferocytosis
Brite
Membrane trafficking [BR:
ssco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
134001309 (si:ch211-266g18.9)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
DUF3533
Motif
Other DBs
NCBI-GeneID:
134001309
NCBI-ProteinID:
XP_062296857
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Position
19:complement(10390144..10395043)
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AA seq
840 aa
AA seq
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MAFKAFTQTDVYEKQAAPKEKDKSSIHCLECYDRNVYIGTKDATVQHLILSSSTNGHLSP
GQSKTREGRARKLGSSNPVAHLRAVPLFNHLLVLWDRSVIALNMFSLEPVPGLKKIQYVS
LFEICHSQLTAQSASVEMVSSSSRRKVIRIHVVGVDRWEVVKEVPLFQEPLALAIDGTTL
CVATTDKYLLCDIKTGSNEELFPHNHSRQHIIVTSVGQGEFLLNGPESLGMFVMKIGICQ
RPPLQWPQEVLAAAVCFPYILTLQPQVLSVYSILDQKHKQTVSLSGAKGLLSTSDGVLVF
TERGIFSLRLVPLDEQIQTLVGHERVEEALLLLDGVQSRHPLESYQELQKAITCLAGFVH
FYQEGFYEARDLFIKGELDPREIIRLYPNMQSCVSGDFQSQLDQMNKSRDLQVLWQEDRS
TFYDYLAFLGDFLRAVRDMEQGLKCSEEVDCTLLRLYTEQTDSENLQQLVAFPNACSLDY
CVPVLEQHNSFFALGSLYQSHGKQIDAIKTWIKIAEGFHQDPSCSDIYGHIMWTLSQLKD
RHVVWTFADWTLHRNQEMGVQIFTKRPPDDHFVTQDVLDLLEKHPLALLLYLEFLIHDVN
SEEERHHSRLALAYVTQTLQEEEETKSDLQATRRKLQQLLWDSKFYDISTVYERVKPTTL
FIEKAILLGRTSEHSQSLQVLVHQGRDPQAAEAYCYKAAQGQDTKFRNTLLLTLLKIYLS
SEDLTSAAVDLLNNNPQVFAAEEAIHLLPESWSVQLVSQFLVGSLRETFHQRRMRRLQQA
LVQAELSRHKVIWMQASKTKVRVNKGQVCKVCKRDLVEPQFAYNLRGELMHTSCTKYLSS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaagccttcacacaaacagatgtctatgaaaagcaagcagctcctaaagaa
aaggacaaatccagcatccactgccttgagtgctatgaccgaaatgtgtatatagggacc
aaagatgcaacagtccagcacctcattctttccagtagcacaaatggacacctgagtcct
ggccagagcaaaaccagagaaggcagggcgagaaaactaggctcaagcaacccagtggcc
cacctgagggcagtcccacttttcaaccatctgctggtcctgtgggaccggagtgttatt
gcccttaacatgttctccttagagcctgttccaggtctgaaaaagatccagtatgtttct
ttgtttgagatatgccactcacaactcacagctcagtctgcaagtgtggagatggtgtct
tcttcgagccgcaggaaagtgatccggatccacgtggtgggagtggacaggtgggaggtt
gtgaaggaagtccctctcttccaggaacctttggccttggctatagatggcacaactctg
tgtgtagctactactgacaagtatctcctgtgtgatataaaaactgggagcaatgaggag
ctgtttcctcacaatcacagcaggcagcatatcattgttacctcggtgggacaaggggaa
ttcctcctgaatgggcctgaatctttgggcatgtttgtgatgaagatcgggatatgccag
cgccctcccctgcagtggcctcaggaggtgctggcagccgcagtatgtttcccttacatc
ctaaccctacagccccaagtgttgtctgtctacagcatattagatcagaaacacaaacag
actgtgagtctcagcggagcgaaaggtctgctctccacatcagatggtgtgttagtgttc
acagaaagaggcattttcagcctgcgcctggtgccgttggacgagcagatccagacactt
gtagggcacgagagggttgaggaggccttattgctgttggacggagttcaaagtcgtcat
ccacttgagtcataccaggagctgcagaaggccataacttgtctggctggatttgttcat
ttttaccaggagggtttttacgaggccagggatctattcattaaaggtgaactggacccc
agagaaatcatccgtctctaccctaacatgcagtcatgtgtcagtggggactttcaatcc
caacttgatcaaatgaacaagagcagagatctccaggtgctctggcaagaggacagaagc
acattttatgattacctggccttcctgggagatttcctcagagcagtccgggacatggaa
caaggcctgaagtgcagtgaagaggttgactgcaccctcctgaggctgtacacagaacag
acagacagtgaaaatctgcagcagcttgtagcatttcccaatgcttgcagtctggactac
tgtgttcctgttctggagcaacacaacagtttttttgcattaggttcactctatcaaagt
catggcaagcaaattgatgcaataaagacatggataaagattgcagaaggtttccatcaa
gacccctcttgctctgatatctatggacacatcatgtggactctcagtcagctgaaagac
agacatgttgtgtggacatttgcagactggaccctgcacagaaaccaagagatgggtgta
cagattttcaccaagcgtccaccagatgatcattttgtgacgcaagatgtcctcgatctc
ttggagaagcatcccctggcactgcttctgtatcttgagttcttaattcacgatgtgaac
agtgaggaggagagacatcacagccgtctggcccttgcatatgttactcagacactgcaa
gaggaagaggaaacaaagtcagatctgcaggcaaccagaaggaagttgcagcagctgcta
tgggactcaaaattctatgacatctcgactgtatatgaacgagtcaagccaacaaccctg
ttcattgagaaagccattctcctcggcaggaccagtgaacactcccagtccctgcaagtg
cttgttcaccaggggcgagacccccaggctgcagaggcctactgctacaaggccgcccaa
ggccaggacacaaagttcaggaataccctgctgctcaccctgctcaaaatttacctgagc
tctgaggatctcaccagtgcagccgtggatctgctcaacaacaaccctcaggtctttgct
gcagaggaggccatccatctcctgcctgagtcctggtctgttcaactggtctcccagttc
ctggttggatccctcagggagacctttcaccagaggcggatgagaaggctgcaacaggct
ctggtccaggcggagctctcgaggcacaaggtcatttggatgcaggcctcaaaaacaaag
gtcagagtgaacaaggggcaggtctgcaaggtgtgtaagagagacctggtagagccacag
tttgcctataacctgcgtggtgagctgatgcatacaagctgcactaaatatttatcatca
tag
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