Scomber scombrus (Atlantic mackerel): 134001415
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Entry
134001415 CDS
T10651
Symbol
aqr
Name
(RefSeq) RNA helicase aquarius isoform X1
KO
K12874
intron-binding protein aquarius
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134001415 (aqr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134001415 (aqr)
Spliceosome [BR:
ssco03041
]
Complex B
Other components
Prp19-related factors
134001415 (aqr)
Complex C
134001415 (aqr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
ResIII
AAA_30
UvrD-helicase
DEAD
UvrD_C_2
SLFN-g3_helicase
AAA
AAA_16
Parvo_NS1
AAA_22
PhoH
DnaB_C
nSTAND3
NB-ARC
Motif
Other DBs
NCBI-GeneID:
134001415
NCBI-ProteinID:
XP_062297012
LinkDB
All DBs
Position
19:complement(10854660..10928459)
Genome browser
AA seq
1468 aa
AA seq
DB search
MATMEKETPAKKSAAPSVSQINAEYVTQLANKYWAPHAKNKLPFDPKVMEDVYEKEILKS
KFAIRKIMLLEFSQYLENYLWVNYTPEVSSNAYLMSICCIVNEKFRENVPAWEVFKKEPS
HFPFFVKCVMEAVLAGENSGLTLKEQTVLLVFLDHCFNSLEVDLIREQVQQLISLPMWMC
LIPSRLQHELKKVPKLQKFWNLIKKKFDKMDADGAEQAKKERVFLSALIKKFLGVLVSIP
PSGTVSMEKVHYCERFIELMIDLEALLPTRRWFNTVLDDSHLVVSCHLSSLAHREKEGHL
FCQLLDMLKFYTGFEINDQTGNALTQKEMTTLHYDRITSLQRAAFAHFPELHDFALSNVA
AVDTRESLTKHFGHLSPNTLHQVASYLCLLPELAEGQDTTHEKEVLLELLVSRHERRISQ
IEQLNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLES
TYEIRQDIEDVVWRMKPWQSEYGGVVFGGWARMAQTITSFSIVEVAKPNIGESWPARVRA
DVTINLNVQDHIKHEWEGLRKHDVCFLITVRPNLPYGTRFDRRQPFVEQTGLVYVRGCEV
QGMLDDKGRVIEEGPEPKPKLRGDARTFRVWLDPNQYQQDMTSSIQSGTEDPYETFNIIM
RRKPKENNFKAVLETIRNLMNTECVVPDWLHDIILGYGDQGSAHYSKMPNQIPTLDFNDT
FLSLDHLHSCFPSSTIKVTEENHELQVPPFRITFPISNKTDKGKKRKADEEVEDKVENTA
LIVEPYVTPNRGPYPYNQPKRNTIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQI
ISNLYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYG
RVNYVLARRLELLREVGRLQESLDVPGDVSYTCETAGHFYLYQVISRWEQYMSKVKPKQA
KKVEVEAVAAHFPFHKYFSNAPQPVFKGRSFEEDMDIAEGCYRHIKKIFTQLEEFRAFEL
LRSGLDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIETFIPL
LLQNPEDGYSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTIDLDAQ
GRARASLCNLYNWRYKHLGNLPHVQQMPEFQVPNPGLTFDFQLINVEDFNGVGESEPNPY
FYQNLGEAEYSVALYMYMRLLGYPADRISILTTYNGQKHLIRDVINQRCGGNPFFGQPNK
VTTVDRFQGQQNDYIILSLVRTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFEL
TPAFNQLTARPLQLHIRPHEYYSQEQPRDASGQPDQIVKNMPEMANLVYNMYMHMIQTSM
KYKQQQQQKLALPPQQTTTDAAEEKAAASSVDPQEETPMEQETPEGEANSEPKSGDGNQD
TVAHAKMPEHPGRDSDSDGEDSGKEQEP
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atggcaactatggagaaggaaacccccgctaaaaagtctgcagcaccttctgtgtctcag
attaatgcagaatatgtcacgcagttggctaataaatattgggctcctcatgcaaagaat
aaactgccgtttgacccaaaggtgatggaagatgtttacgaaaaagagattctcaagtct
aaatttgccatcagaaaaatcatgctgcttgagttcagccaatatcttgagaactacctt
tgggtcaactacactcctgaggtgtccagcaatgcctacctcatgtctatttgttgcatt
gtgaatgagaagttcagagagaatgtcccagcatgggaggtgttcaaaaaggaacccagc
catttcccatttttcgttaaatgtgtgatggaggctgttttggcaggcgagaacagtggc
ctcactctaaaggaacaaaccgtgctgcttgtcttcctggaccactgcttcaacagtctg
gaggtagatttgatcagggagcaggtacagcagctcatctctctgcctatgtggatgtgc
ctcataccatcccgactccaacatgagctgaagaaagttccaaagctgcagaagttctgg
aatctaatcaaaaagaagtttgataaaatggacgctgatggagccgagcaggctaaaaaa
gagagagtctttctttcagctctcattaaaaagtttcttggagttcttgtgtcaattccg
ccatcagggactgtatccatggagaaggtacattactgcgagagattcattgaactcatg
attgatttggaggcccttctgcccaccagacgttggttcaatacggtgctggatgactct
cacttggtggtcagttgccacctgtccagcctcgcccacagagagaaggagggacacctc
ttttgccagttgctcgacatgctgaagttctacacaggttttgagatcaatgaccagacg
ggaaacgccctgacacagaaagagatgaccaccctgcactatgacagaatcacatccctg
cagagggcagcctttgctcatttcccagagttgcacgactttgctctgtccaacgtagca
gcagtagacactcgggagtccttgaccaagcattttggacatctcagtcccaataccctt
caccaggtggcctcatatctgtgtctgttgccagagttggctgaagggcaagacaccacc
catgagaaggaggtcctccttgagttgttggtgtcccgtcacgagcgcaggatctctcag
attgagcaacttaatcagatgcccctttatccaacagagaagataatctgggatgagaac
attgtcccgacggagtactactcaggcgaaggttgtcttgcactacctaagctgaatctc
cagttcctcaccctccatgattacctgttgagaaactttaacctctttcgtctagagtcc
acctatgagattagacaggacatagaagatgtggtgtggcgtatgaaaccatggcaatca
gaatatggtggagtggtgtttgggggttgggccagaatggctcagaccatcacttctttt
tccatagtagaggtcgccaagcccaacatcggagagagctggcctgctcgtgtccgagct
gatgtcaccataaacctcaacgtacaagatcatatcaagcatgagtgggaagggctgcgg
aagcacgatgtttgctttctgatcacggtgcggcccaacctgccctacggcacacgcttc
gaccggcgccaaccctttgtggagcagactggcctggtgtacgtgagaggctgcgaggtg
cagggtatgctggatgacaagggacgcgtcattgaggaaggacctgagccaaagcctaag
ctgcgaggagacgcgagaacattccgtgtgtggctggacccgaaccagtatcagcaggac
atgaccagcagtattcagagtggcaccgaagacccatatgagacattcaacatcatcatg
agacgcaaaccgaaggagaataatttcaaggcagtgctagagaccatcagaaacctgatg
aacacagagtgtgttgtcccagactggcttcacgacatcatcctaggctatggagaccaa
ggcagtgcccactattccaaaatgcctaatcagatccccacgttggacttcaatgacacc
tttctgtccctggaccatttacattcctgtttccccagttccaccataaaggtcactgag
gagaatcatgaactgcaagtcccacctttcagaatcacgtttcccatctcaaacaaaacg
gacaagggaaagaagagaaaggctgatgaagaagtggaggacaaagtggagaacacagcc
ttgatcgttgagccatatgtcacccccaaccgtgggccatatccctacaaccagcccaaa
cggaatacaattcaattcactcccactcagattgaagccattcgagccgggatgcagcca
gggctcaccatggttgtaggaccaccaggtactggaaagacagatgttgctgttcagatc
atctcaaacctctatcacaactttcctgagcagaggaccctcatagtgacacattcaaat
caggctctgaaccagctgtttgaaaagatcatggcactagacatcgatgaacgccacctc
ttgcgtctgggtcacggagaagaggagctggagactgagaaggacttcagcagatacggc
agagtaaactatgtcctagccagaagactggagctccttagagaggtgggaaggttacag
gagagcttggatgtccccggtgatgtttcttacacctgtgagactgcaggacacttctac
ctgtaccaggtgatatctcgctgggaacagtatatgagcaaagttaaacctaaacaggcc
aagaaagtggaggtggaggctgtggctgcacactttcccttccacaagtacttctccaac
gccccccagcctgtgttcaagggccggtcatttgaggaggacatggacatcgcagagggc
tgctaccgccacatcaagaaaatattcacccagctggaggagtttagagccttcgagctg
ctgaggagtggactggatcgctccaagtatctgctagtgaaggaagctaaaatcatcgct
atgacatgcacacatgctgcactcaaacgtcatgacctggtggagcttggatttaagtat
gacaacatcctgatggaagaagctgctcagattctggagatcgagacctttatccccctg
ttgttgcagaacccagaggatggatacagcaggctgaagcgttggatcatgattggagac
caccaccagttgccccctgtgatcaagaacatggccttccagaagtactcaaacatggaa
cagtctctcttcactcgatttgtacgcctgggagtgcccaccatagatctggatgcgcag
ggccgtgcacgtgcaagtctgtgtaacttgtacaactggcgctacaaacacctgggaaac
ctgcctcatgttcagcaaatgcctgagttccaggtgcctaaccctggcctgacctttgac
ttccagcttattaatgtggaggacttcaatggcgtgggagagtctgagcctaacccttac
ttctatcagaacctgggggaggctgagtattctgtggctctgtacatgtatatgcgtctg
ttgggctatcctgctgaccgcatcagcatccttaccacctacaatggacaaaaacatctg
atcagagacgtcatcaaccagcgctgtggtggaaatccattctttggacagcccaacaag
gtgacaactgtcgacaggttccagggtcagcagaatgactacatcatcctctcactggtc
cgcaccaaagccgtaggacacctcagggatgtgaggcgtttggtggtagccatgtcaaga
gccagactgggtctgtacatctttgcccgggtgtctctgtttcagaactgctttgagttg
actcctgccttcaaccagctcactgccagaccactgcagctgcacatccgaccacacgag
tactacagccaggaacagcctagagatgcttctggacagccagaccagattgtcaagaac
atgccagagatggccaacctagtgtacaatatgtacatgcacatgatccagacctccatg
aagtacaaacagcaacaacagcagaaactggctctgcctccgcaacaaaccacaacagat
gctgcagaggagaaagcggcagctagctctgtggacccacaggaagagacccccatggag
caggaaaccccggaaggagaggcaaactcagagccaaagtcaggggacggaaatcaagat
actgtggctcatgctaagatgccagagcaccctggcagagacagcgacagtgatggggag
gacagtggaaaggagcaagagccatag
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integrated database retrieval system
