Scomber scombrus (Atlantic mackerel): 134001734
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Entry
134001734 CDS
T10651
Symbol
zgc:136908
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04137
Mitophagy - animal
ssco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134001734 (zgc:136908)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
134001734 (zgc:136908)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134001734 (zgc:136908)
03009 Ribosome biogenesis [BR:
ssco03009
]
134001734 (zgc:136908)
04131 Membrane trafficking [BR:
ssco04131
]
134001734 (zgc:136908)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
134001734 (zgc:136908)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
134001734 (zgc:136908)
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
134001734 (zgc:136908)
Membrane trafficking [BR:
ssco04131
]
SNARE
SNARE associated proteins
Others
134001734 (zgc:136908)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
134001734 (zgc:136908)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
134001734 (zgc:136908)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_33
AAA_2
AAA_22
TIP49
Vps4_C
RNA_helicase
AAA_14
AAA_28
NPHP3_N
Parvo_NS1
ATPase_2
nSTAND3
Mg_chelatase
AAA_7
DUF815
ATPase
AAA_18
IstB_IS21
ABC_tran
AAA_17
NACHT
TsaE
Sigma54_activat
AAA_24
ResIII
Viral_helicase1
NB-ARC
SLFN-g3_helicase
PhoH
Cytidylate_kin
KAP_NTPase
Zot
AAA_6
Motif
Other DBs
NCBI-GeneID:
134001734
NCBI-ProteinID:
XP_062297060
LinkDB
All DBs
Position
2:11110865..11119420
Genome browser
AA seq
837 aa
AA seq
DB search
MQQSKEKKLRLCLELLGCKKTKTTLGQIRSVRTSNLCPKGEDFSTAILKQKHRPNRLIVD
EAINEDSSIVSLSQNKTEELQLFRGDTVVLRGRKRRQTVCIVLTDATCGDERIRMNRVTR
NNLRVRLGDVISIHACPDIKYGKRIHILPIDDTIEGLTGNLFEVFLKPYFLEAYRPVHQG
DVFLVRGSMRAVEFKVVETDPSPYCIVAPDTVMYCEGEPIKREDEEESLNDIGYDDIGGC
RKQLAQIKEMVELPLRHPGLFKTIGVKPPRGILLYGPAGTGKTLVARAVANETGAFFFLI
NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL
TLMDGLKQRAHVVVMAATNRPNSVDTALRRFGRFDREIDIGIPDSTGRLEILQIHTKNMK
LADDVDLERIGTETHGHVGADLAALCSEAALQAIRKKMTLIDLEDDTIDADLLNSLAVTM
DDFEWALSQSNPSALRETVAEVPHVNWEDIGGLDDVKRELQELVQYPVEYPDKFLKFGMT
PSRGVLFYGPPGCGKTLLAKAIANECQANFVSIKGPEMLTMWFGESEANVRDVFDKARQA
APCILFFDELDSIAKSRGGGGGDAGGAADRVINQILTEMDGMSDKKNVFIIGATNRPDII
DAAILRPGRLDQLIYIPLPDKRSRSAILRANLRKSPIARDVDLEYLSGITEGFSGADLTE
ICQRACKLAIREAIEAEIKAERQRQSRPGIPMDEDFDPVPEIRKDHFEEAMRFARRSVSD
NDIRKYEMFAQTLQQSRGFGNFRFPSATSSQSGSQGSGSGSGRPGLYREEGEDDLYQ
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagagtaaagagaaaaaactgagactctgcttggaacttctgggctgcaagaag
accaaaaccacactggggcagatcagatcagtcagaacctcaaacctttgcccaaaggga
gaagatttctcgactgccatcctgaagcagaaacacagaccaaacagactcattgtggac
gaagctatcaatgaagacagcagcattgtcagcctatcacagaacaagacagaggagctg
cagctcttccggggggacacagtggtgttgaggggtcggaagcgccgccagacagtgtgc
atcgtcctgactgatgccacctgcggagatgaacggatccgcatgaaccgtgtgacccgc
aataacctgcgtgtccgccttggtgacgtcatcagtattcatgcctgccctgatatcaag
tatggaaagaggatccatatcctccccatagatgacaccattgagggcctgacagggaac
ctctttgaggttttcctcaagccatactttctggaggcttaccgccccgtacatcaaggg
gacgtcttcctggtgagggggagcatgcgggctgtggagttcaaggtggtggagacagac
ccgagcccttactgtatcgttgcccctgacaccgtcatgtactgtgagggagagccaatc
aaaagagaggatgaggaggagagtcttaatgacattggctatgacgacatcggaggttgt
cgaaagcagcttgcccagattaaagagatggtggagcttcctctcagacaccccggcctt
tttaagacgataggagttaagccccccagaggtatcctgctgtacggccctgcaggcaca
gggaagaccctggttgcgcgagccgtagccaatgaaaccggcgccttcttcttcctcatc
aatggtcctgagatcatgagtaagctggctggagagtcagagagcaacctgagaaaggcc
tttgaggaagcagagaaaaacgctccagccatcatctttattgatgagctggatgccatc
gcccccaagagagagaagacccatggagaagtggagaggcgtatagtgtcccagctcctg
accctgatggatggcctgaagcaaagagctcatgtggttgtcatggcagcaacaaaccga
cctaatagtgtggatactgctctgagacgctttggcagatttgaccgtgagatcgacatt
ggaatcccagattcaactggcagactggagatcctgcagatccacaccaaaaacatgaaa
ctggctgatgatgtcgatttggagaggatcggcacagagactcacggccatgtgggcgcc
gacctggctgctctgtgctcagaagctgctctgcaagccatccgcaagaagatgacactc
atagacctggaggacgataccatcgatgccgacctgctcaactcactagctgtcaccatg
gacgacttcgagtgggctctgagtcagagcaacccatcagctttgagagaaactgttgca
gaggtacctcatgtcaactgggaagacatcggaggactggacgatgtcaagagagaactt
caagaactggttcagtacccagttgagtatccggacaagttcctaaagtttgggatgacc
ccatctcggggagtgttgttctatggtcccccaggctgtgggaaaacccttctggctaag
gccattgccaatgagtgccaggctaactttgtctccatcaaaggacctgagatgctcacc
atgtggtttggagaatcagaggccaatgtcagagacgtctttgataaggccaggcaagca
gccccctgcatcttgtttttcgacgagttggactccattgccaaatccagagggggcggt
ggcggggatgcaggtggcgcagctgacagagtcatcaaccagatactcacagagatggat
ggcatgtccgacaaaaagaatgttttcatcataggcgccacgaacagaccagacatcata
gacgcagccatcctgaggccgggccgtttagatcagctcatctacatcccgctcccagac
aaacgctctcgcagcgccatcctacgcgccaacctccgcaagtcccctattgcccgagac
gtggaccttgaatacctgtctggtatcactgagggtttctctggagccgacctgacagag
atctgccagcgggcttgtaagctggccatccgtgaggccatcgaggccgagatcaaagct
gaacgtcagaggcagagcagaccgggcatccccatggatgaggacttcgatccagtccca
gagatcaggaaggaccactttgaagaggcaatgcgatttgctcgtcgctctgttagtgac
aatgacatccgtaaatatgagatgtttgctcaaactctgcaacagagccgaggttttggg
aacttcaggttcccctcagctactagttcacagtctgggagtcaaggatcaggttctggg
tcagggaggccaggcttgtacagagaggaaggcgaggatgacctttatcagtga
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integrated database retrieval system
