Scomber scombrus (Atlantic mackerel): 134001922
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Entry
134001922 CDS
T10651
Name
(RefSeq) E3 ubiquitin-protein ligase RNF31-like isoform X1
KO
K11974
E3 ubiquitin-protein ligase RNF31 [EC:
2.3.2.31
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04217
Necroptosis
ssco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
134001922
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
134001922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134001922
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
134001922
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
134001922
Multi subunit type E3
LUBAC complex
134001922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_HOIP
E3_UbLigase_RBR
IBR_1
PUB
IBR
Zn_ribbon_RanBP
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
134001922
NCBI-ProteinID:
XP_062297089
LinkDB
All DBs
Position
20:complement(16647358..16662875)
Genome browser
AA seq
1113 aa
AA seq
DB search
MSCSPPSVQMDEVRRRAQSLLITSGSAQDVKADVQTMAGMPLPPSEKYQHFTAEAMLRDN
TADRNRQEALESLSRLVKALSILEKYGCNLICPARPRYWRSVKHNNPVFRSTVDAVKGGR
RVLYLYGYTNQQIDGLSFPEEASEPDTEKVTAVTLEVMTLRTEVDMLIKGTHPHLENFKD
IIPFVIQQDKLVSDAVVILPGEEKHGDEPEVLSPSPKPAQVPVQGLPLKPSTGSPPSIHC
NLCGGIVSLLCPSCDNKPFCDACDDLFHRHPSRANHKRQSTKQEETCTICGISAVHAQCS
TCVQKLCLKCDKIFHSHPDRKGHSRTVITPAKTSSPSLSPWECAHCTTVNEMRAVLCTTC
ERPRLATAASTAQESPLSVPTSPNTDWQCKSCTVMNQGSSILCEVCERPRLATRPPVAPV
LSSPGSLSDAEAKWTCNHCTYVNTKATSLCEMCNLSCKDSAGLSLLRSHPQTPSTTKDQP
QPGGRPQPIPSLNLELTRQKMLREDGLQLIHQIREAEKRGVSPEEVYAAVCMCGSSNINP
CDWLTSELPHLLDEICAMAASVQLNYKAGDSETQPPTVERDRDESEQSGPVVTGEGVKLS
RAEAKLAWLAVGGDTDRAVKQLLRDRQIKMRELHSLGFRDVSRCEEALRQSGGEVKGALS
HLQRPVLEPFHQRIWTDQPEPPIDPKHHDKQRMCRRLLALYDLPSWGRCELTLSLLQDPD
VASSLEDVVQAVKESNDRDFIRRLLNNECPCCLSIFPRSKMQSLTSCQCSVCHECFGQHF
TIAVRDKHIRDMVCPVCGEPDINDPEQLDSYFSTLDIQLRECLELDVYDLFHKKLTEHTL
MKDPKFLWCYHCTTGFINEGDQLKITCMSCNNSFCAQCKKPWEPQHQDLSCEQFQQWKRE
NDPEYQKQGLAGYLRDNGITCPHCRFPYALTKGGCMHFTCSQCRYEFCSGCNNPYQKAAC
KTVDCNLNCLHAHHPRDCLFYLRDWEPPRLQALLQRSGVEFNTDAPNEAQTDTCGVMEQK
DGGQQNDLPCGIQTQPGQAGLCEKHYREYLVSLINAHSLDPAVIYDVQELTRACQRYQVD
MQRGENEEDKTYYDRLLMKLREVPLGEKVPRKK
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagttgcagccctccatcggtccagatggatgaggtgaggaggagagcccagtccctc
ctcatcacctcaggctcggcgcaggatgtgaaggctgatgttcagaccatggccggcatg
cctctgcctccgtctgagaagtaccagcacttcacagcggaggccatgctgagggacaac
actgcagaccgcaacagacaggaggcgctggaatctctgagtcgactggtcaaggccttg
agtatcctggagaagtacggttgcaacctgatctgtcccgccaggcccagatactggcgt
agcgttaagcacaataaccccgtgttcagatccacagtggatgccgtcaagggtggtcga
cgtgtcctctatctctacggttacaccaatcagcagatagatggcctcagtttcccagag
gaagccagtgaaccagatactgaaaaagttactgcagtgacgctggaggtcatgacctta
cggacagaggtggacatgctcattaagggcacacatcctcacctagaaaacttcaaagat
atcatcccatttgtcatccagcaggataagctggtgagtgatgctgtggttatcctgcct
ggagaggaaaagcatggagacgagcccgaggttctgtccccttcccctaaacccgctcag
gtccctgtacagggactacctctgaaaccgtcaacaggctctcctccatcgattcattgc
aatttgtgtggtggcattgtgtctctgctttgcccgtcgtgtgacaataaacctttctgt
gatgcatgcgatgacctcttccaccgtcacccttctagagccaatcacaagaggcagagc
accaaacaggaagagacctgtaccatctgtggtatttccgctgtgcatgctcagtgctcc
acatgtgtccagaagctgtgtctgaagtgtgacaagatcttccactctcaccccgaccga
aaggggcactcccgaactgttattacaccagccaaaacatccagtccatctttgtcacct
tgggagtgcgctcattgcactacagtgaacgagatgcgagccgtactctgtacaacctgt
gagcggcctcgactcgccacagctgcttctactgctcaagagagcccactgtcagtgcct
acatcaccaaacacagactggcagtgtaagagctgcacagttatgaatcaaggcagcagc
atcctctgtgaggtgtgtgagcgccctcgcctggccactcgcccgcccgtcgccccggtg
ctgtccagcccaggatctctgtctgatgctgaagcaaagtggacctgtaatcactgcact
tatgtcaacactaaggccacctcattgtgcgaaatgtgcaacctgtcatgcaaagactct
gctggacttagtcttctgcggtctcacccgcagactccatccaccactaaagatcaacct
cagccaggcgggaggccccagccgatacccagccttaacctggagctgacgagacagaag
atgttgagggaagacggacttcaactcatccaccagataagagaagcagagaagcgcggt
gtcagcccagaggaggtgtacgccgccgtctgcatgtgcggcagcagcaacatcaacccc
tgtgattggctgacgtcagagctcccgcacctgctggatgaaatctgcgccatggcagcc
tctgtccagctaaactacaaagcaggagattcagagacacagccgcccacggtggagaga
gaccgagacgagtcagagcagagcggtccagtcgtcacaggtgaaggtgtgaagctgtcc
agagctgaggccaagctggcgtggttggcagtaggaggcgacactgaccgggcagtgaaa
cagctgctgagagaccgacagattaagatgagagagcttcactctctgggcttcagggac
gtttccaggtgtgaggaagccctgcggcagagtggcggagaagtgaagggggctttgtct
catcttcagcgccctgtcttagagcccttccaccagcgcatctggaccgatcagcctgag
ccaccgattgatcccaaacatcacgacaaacagaggatgtgccggcgtctgcttgcactg
tatgacttgcccagctgggggcgctgcgagctcaccctgtcgctgctccaagatccagac
gtcgcttcgtcgctggaggatgtagtgcaagctgtgaaagaatctaacgacagagatttc
atcaggcgtctccttaataacgagtgcccctgctgtctgagtatcttcccccgcagcaag
atgcagtcactgacttcctgtcagtgctccgtgtgccacgagtgcttcgggcagcacttc
accatcgctgtgagagacaaacacatcagagacatggtgtgtccagtctgcggcgaaccg
gatatcaatgaccccgaacaactggacagctacttctccacactggacatacagctgcgg
gagtgcctggagcttgacgtgtacgacctgtttcataaaaagctgacggagcacactctg
atgaaagatccaaagttcttgtggtgctatcattgcaccaccgggtttatcaatgaagga
gaccagttgaagatcacctgcatgtcttgcaataatagtttttgtgctcagtgcaaaaaa
ccttgggagcctcagcaccaggatctgtcctgcgagcagttccagcagtggaagagggag
aatgacccggagtaccagaaacagggcctggcaggctacctgagagacaatggcatcacc
tgtcctcactgccgattcccttacgcactgacgaaaggcggctgcatgcacttcacctgc
tcccagtgcaggtacgagttctgcagcggctgcaacaacccctaccaaaaggctgcgtgt
aagacggttgattgcaacttaaattgtctgcatgctcatcaccctcgagactgtctcttc
tatctcagagactgggagccgcccagattgcaggccctgctgcaaaggagtggtgtggag
ttcaacacagatgctcctaatgaagctcagactgacacttgtggagtgatggagcagaaa
gatggaggtcagcagaatgatttaccgtgcggcatccaaacacagcctggccaagctgga
ctctgcgagaagcactacagggagtatctggtcagtctgattaacgctcactctctggac
cccgctgtgatctacgacgtccaggagctgacccgagcctgccagagataccaggtggac
atgcagagaggagagaacgaggaggataaaacttactacgatcgactgctcatgaaactg
agggaggttcctcttggagaaaaggttcctcgaaagaaataa
DBGET
integrated database retrieval system
