Scomber scombrus (Atlantic mackerel): 134001947
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Entry
134001947 CDS
T10651
Symbol
gli3
Name
(RefSeq) transcriptional activator GLI3
KO
K06230
zinc finger protein GLI3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
134001947 (gli3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
134001947 (gli3)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
134001947 (gli3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_15
zf-H2C2_2
zf-C2H2
FOXP-CC
zf-C2H2_4
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
134001947
NCBI-ProteinID:
XP_062297136
LinkDB
All DBs
Position
20:complement(20598664..20674055)
Genome browser
AA seq
1632 aa
AA seq
DB search
METHSQASSAAEKKKRVETIVATKGSSARNDISEKAVASSTTSNEDESSGTPYHRERRNA
ISSQAPTSGAHDRNVNEEPSTSTEDRPSLLKKELHSSLPHLAEHALPYRGTLFTMDPRNG
YLDSHYAAPQFFPTFHPPVPIDDRHTQGRYIYEPSPVPPLHVPPGLAGSPAFSDISLIRI
SPQRNPSVGAESPFHPSHPYINPYMDYIRSLHSSPSISVLSATRGLSPADAPHTGLTTAE
YYHQMALLAGHRSPYTADLLPSVASTAGATSASALHMEYLQAMENSRFPSPRLPSRPSRK
RPLPISPLSEHSFDLQTMIRNSPNSLVTMLNNSRSSSSTSGSYGHLSAGAISPALSFAYP
PTPVALHVHQQLIGRQPGIVGSAFGHSPPLIHPTPAFATQRPVPGIPPSGLSASERSAVS
NDSSQIKPTSESAVSSTGDPMHHKRSKMKPEEELPSPGAVSVQDHPDGMTMVKEEGDKDE
SKQEPEVVYETNCHWENCCREFDTQEQLVQHINNDHIHGEKKEFVCRWEECSREQKPFKA
QYMLVVHMRRHTGEKPHKCTFEGCAKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSN
ASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRGDYPRP
PPQPREPGANSQGRSPGQLPLGGYTDQREYNHATSKQDECLQVKSIKTEKPMTSQPSPGG
QSTCSSDQSPISTYPSSGVQLAVSAGRSPGEGLEEDDEKEEIEEEAEEECEGEPAPIMDS
TVSTATAAMLTLQARRCVGRPMRWMEHIKMERLKQVNGALPRLGPLSPTPPPKVSTLPNI
LGKGSCLGRQWGVSAPQPPAHAELGSTELTVLNLLLDRRDSSGSATSSAYLSSSRRSSGI
SPCFSSRRSSQTSQSEGMAAHHRRLHNLSSTDSYDPISTDASRRSSEASQYGGGTGGWSG
VIPPGGSCGGVGISIGGGGVTRGMLSLTPAQHYHLKAKYAAATGGPPPTPLPNMERMSSK
THMGMMDDGGSNHSLPPLVRPHRCSEGTNGYTNGYMGHAGYRRRVLYPGEGPLNGNRRAS
DPVRTQAPDNCSLPPVQRFNSLNNLHPLPPLSHHSTPEIRNFSLQNYTRSEGNLQRGLQH
SPHTPSIAEHAALEALAMEDDGEASLLLGDEDMLPDDLVQYLHSQVQTDGGSYMHIEDQI
VSSQRDTSHPSMEVNEQTSGLNLAFRGSHNLQQQQILARKSPSKLPIQWNEVSSGSADRS
PQREQNHQTQCGRWSGTEHGPTSEPFGRFGNMVVQQQVPLDFQNSCAQANQSQNACSVNA
AVKLETSPNSCAEMRVSGHNSINTFGRSQFSQIIDGPLPQGFKQQGSSGPQKQSHFQQNH
NSSTSCQVGNNLILSRTAMENLPSLSQGTGLHHNRQVHVPRPPISGYRNLVRTQQYHNPE
SCNGIQASLNQQQQQQRNGNHCSLAHQVSGLKLEAPDHGYLEHGFSDRIPFESGDPKASS
FSVLEDQCLLDSMAASVGQDSGSGDPVALLSPGSDQVTSTVDGTVAGVLDDGVSLDFGAM
LEDGYDQGSLVSGVLSPSIFQGLSRTSSRLTTPRASANFHSVAPGLNNMAIGDMSSLLTT
LAEESKFLAIMQ
NT seq
4899 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccactcccaggccagttcagcagctgagaagaagaagagggtggagaccatt
gtggcgaccaaaggctcatcagcacgcaatgacatcagtgagaaggcagtggcctccagc
accacctcaaacgaagatgagagttcaggcacgccttaccaccgcgagaggcgcaatgct
atcagctcccaggccccgacgtccggtgcccacgacaggaacgtgaatgaggagccctca
acctccacagaggaccgcccctccctgctcaagaaggagctgcacagttccctgccccac
ctggctgagcatgccctcccatacagaggcactctcttcaccatggacccccgcaatggc
tacctagactcacactatgccgcaccgcagttcttccccaccttccatcctcctgtgcca
atcgacgacagacatacccagggacgttacatctacgagccttctcctgtgccccctctt
cacgtgcctccagggttggcgggcagtccagctttctccgacatctccctcatccggatc
tcgccccagcggaacccctctgtgggggcggagtcgccctttcacccctcgcacccctac
atcaacccatacatggactacatccgttcgcttcacagcagcccctccatctccgttctg
tcagccacccggggcctcagccctgcagatgcccctcacacaggtctgaccacagctgag
tactaccaccaaatggctctgctggcaggccaccggagcccttacacggccgacctgctc
ccctctgtggcgtccacggccggcgctaccagtgccagcgctctgcacatggagtacctg
caggcgatggaaaactctcgtttcccaagcccgaggctgccatcacggcccagcaggaag
cgccccctgcccatctcgcccctctctgagcacagctttgacttgcagaccatgatccgc
aactcgcccaattctctcgtcaccatgctcaacaactctcgctccagctcgtccaccagc
ggctcctacggtcacctctctgcaggagccatcagcccagcgttaagcttcgcctatcct
ccgaccccggtggctttgcacgtgcatcagcagctcattggccgccaaccaggcattgtg
ggctctgcctttggccacagtccgccattgatccacccgacgccggccttcgccacccag
aggcccgtacctggcatccccccctctgggctcagcgccagcgagcgttcggccgtctcc
aacgactcctcacagatcaaaccaacaagtgaatctgcagtgagcagcacaggagacccg
atgcaccacaaacgctccaaaatgaaaccagaggaagagttgccgagcccaggagcagtg
agcgtacaggatcatcctgacggcatgacgatggtgaaggaggaaggagacaaggatgag
agcaaacaggagccggaggtggtttacgagacaaactgccactgggagaactgttgccgc
gaatttgacacgcaggagcagctagtgcaacacatcaacaatgaccacattcacggggag
aagaaggagttcgtatgtcggtgggaggaatgctcaagagagcagaagccctttaaggca
cagtatatgctggtggtccacatgcgcaggcatactggggaaaaaccacacaagtgcaca
tttgaaggctgtgccaaagcctactcccgtctggaaaatcttaagactcacttgcgatcc
cacacaggagagaaaccttatgtgtgtgaacatgaaggctgcaacaaggccttttccaac
gcgtcagaccgagcgaaacatcagaatcgcacacactcaaatgagaaaccgtacgtgtgc
aaaatcccaggctgcaccaaacgttacacggaccccagctccttacgcaaacacgttaag
acggtgcatgggcccgaggcgcacgtcaccaagaaacagcgtggagattacccacgccct
cctccccagcctcgggagcctggagccaacagtcagggccgatctccaggccaactgccc
ctcggtgggtatacggaccaaagggagtacaaccacgctacctcaaaacaggatgaatgt
ctgcaggtgaagtccatcaagacagagaaacccatgacgtctcagccaagccctggcggt
cagtctacatgcagcagtgaccagtcccccatcagcacctatcccagcagtggagtccag
cttgctgtgagcgccggacgctcgccaggggaggggctggaggaggacgatgagaaagag
gaaatcgaagaggaggcagaggaggagtgtgagggtgagccagcccccataatggactcc
acagtctccacggcaactgcagccatgctgaccctgcaggcgaggcgatgtgttggccgc
cccatgcgctggatggagcacatcaagatggagaggctgaagcaggtgaatggagcgctg
cccaggctggggcccctgtccccaacaccgccccccaaagtgtccacactacccaacatc
ctggggaagggatcctgtctaggcaggcaatggggggtgtctgctcctcagccacctgct
catgctgagctgggtagcacagagctaacagtgctcaacttgctcctagaccggcgtgac
agcagcggtagcgccaccagctcagcctacctgagcagcagccggcgctcctcaggcatc
tccccctgcttctccagccgacgctccagccagacttcccagagtgagggtatggcagcc
caccaccgccgcctccacaacctaagttccaccgactcatacgaccccatctccactgac
gcctcccgccggtccagtgaggctagccagtatggaggtgggacaggaggatggagtgga
gtgataccccccggtgggagctgtggaggtgtaggaataagcataggaggaggaggggtg
acacgggggatgctcagtttaaccccagcacagcattaccacctgaaagccaagtatgca
gcagcaactggtggcccaccacccacgcctctacccaacatggagcgcatgagctcgaaa
actcacatgggcatgatggatgacggtggcagtaaccactcactgccacctctagtcagg
ccacaccgctgcagtgaaggcaccaacgggtacaccaatgggtatatgggacatgcaggt
tacaggaggagggtcctctatcctggcgagggaccactgaatgggaaccggagggccagt
gacccagtgcggacgcaggctcctgacaattgcagtctgcccccagtgcaacgcttcaac
agtcttaacaacctccaccctcttccacctctgtctcatcattctacacctgaaattcgc
aactttagcctacagaactacactcgctccgagggcaacctgcagagaggcctacagcac
tcaccgcacactcccagcatcgcagaacacgcagccttagaagctctggctatggaggat
gatggggaggcgagcctgttgcttggggatgaggacatgctaccagatgacctggtacaa
tatctccactcacaggtccagacagatggcggctcctatatgcacattgaggaccaaata
gtttctagccaaagggatacctcccatccatctatggaggtgaatgagcagacttcaggg
ctaaacttggccttccgtgggtcccacaacctccagcagcagcagatactggcaaggaag
agtcctagtaagcttcccatccagtggaatgaagtgagctccgggagtgctgacagatct
ccacagagggaacagaaccaccaaacacaatgtggaaggtggtcaggtacagaacatgga
cccacatctgaaccttttggcaggtttggaaacatggtggttcagcagcaagtgcccctt
gattttcagaacagttgtgctcaagctaaccagtctcaaaatgcttgcagtgtcaacgct
gcagtgaagctagagacatcaccaaactcctgcgcagagatgagagtatctggtcacaac
tctataaacaccttcggcaggtctcaattctcccaaataattgatgggcctcttccgcag
ggcttcaaacagcagggctccagtggacctcaaaaacagagccactttcagcagaaccac
aacagtagcacctcctgccaggttgggaacaacctaatcctaagtaggaccgccatggaa
aacctccccagcctctcccagggaactggtcttcatcacaatcgacaagtccatgtccct
cgcccaccaatcagcggttacaggaacttggtcaggacccagcaatatcataatccagag
agctgcaatggaatccaggctagtctcaatcagcagcaacaacagcagaggaatgggaac
cactgttcccttgcacatcaggtatctgggctgaaactggaggccccagaccatggatac
ttagagcatggcttcagtgatcgcattccctttgagtcaggagatcccaaggcctcctcg
ttctccgtcctggaagaccagtgcttgctagactccatggctgcatctgtgggacaagat
agtggcagcggggaccctgttgcgcttctctctcctggttcagaccaggtgaccagcaca
gtggatggcactgtggccggtgtattggacgatggggtaagtctggactttggtgccatg
ctggaggatggctatgaccagggtagcctggtctcaggggtgttgagtccctcgatcttc
cagggtctgtccaggacctcatcacggctgacaacccctcgagcatctgcgaacttccat
agtgtggcccctggcctaaacaacatggctattggagacatgagctctctcctcaccacc
cttgctgaggagagcaagttcctggctatcatgcagtag
DBGET
integrated database retrieval system
