Scomber scombrus (Atlantic mackerel): 134001974
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Entry
134001974 CDS
T10651
Symbol
arfgef1
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
134001974 (arfgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134001974 (arfgef1)
Membrane trafficking [BR:
ssco04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
134001974 (arfgef1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
BIG2_C
Sec7-like_HUS
DCB
Sec7-like_HDS
Motif
Other DBs
NCBI-GeneID:
134001974
NCBI-ProteinID:
XP_062297179
LinkDB
All DBs
Position
20:13514006..13565624
Genome browser
AA seq
1937 aa
AA seq
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MFEGKKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKEESEKLSPPSGDGKS
GSSTLPPIKSKTNFIEADKYFLPFELACQSKCPRIVITSLDCLQKLIAYGHLTGSAPDST
APGKKLIDRIIETICACFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCYN
IYLASKNLINQTTAKATLTQMLNVIFARMENQALQEAKQLERERHRQHSPVTQHTEPDSP
QLQTHIHPPAKGMIQEANGPVTPPTPSTNIPSTPSTPSTPAPEGGSRSVSGEQEEQREQE
EQGEQGSVYESPDPENGSGFCVAENEQTEADQATAAAQNAAAQQHPEAGDEEEEEETPNY
EEKAQEIVQSILQEVVNTVAGGHCLDPANLCSDTKESGVESEQAESEPAEAVTEGTQCSM
EDEGTLGSDSEHVHANGIPGTPISASFTPSLPDDRLSLSSNDTQESGAAPGQPPGAKFSH
ILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKVLSLQLLLSILQNAGPIFKTNEMF
INAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSHFKTHLKMQIEVFFKEIFLYILET
STSSYDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRGGHE
LGTTPLQELTLRKKGLECLVSILKCMVEWSKDQYVNPNSQTSLGQEKPSEQESTETKAPE
TINRYGSINSLDSTASSGIGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGI
QYLQEQGMLGTTPEDLAQFLHQEERLDSTQVGEFLGDNDRFNKEVMYAYVDQMDFQGKDF
VSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTD
LHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYDEIAGKKIAMKETKELTMKSNKQ
SVASEKQRRLLYNVEMEQMAKTAKALMEAVSHVQAPFTSATHLEHVRPMFKLAWTPFLAA
FSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTASSGISEMK
QKNIDTIKTLITVAHTDGNYLGNSWHEIMKCISQLELAQLIGTGVKARYISGTVRSKEGF
LTSTKEQSNDEYLGLVGGTVDRKQIASIQESIGETSSQSVVVAVDRIFTGSTRLDGNAIV
DFVRWLCAVSMDELASPTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGDHFNKVGCS
TNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVVRCIA
QMVNSQAANIRSGWKNIFSVFHLAASDQDESIVELAFQTTGHIVTNVFEKHFAATIDSFQ
DAVKCLSEFACNASFPDTSMEAIRLIRHCAKYVSERPQAFKDYTSDDMNVAPEDRVWVRG
WFPILFELSCIINRCKLDVRTRGLTVMFEVMKTYGHTFEKHWWQDLFRIVFRIFDNMKLP
EQQTEKAEWMTTTCNHALYAICDVFTQYFESLNDVLLDDILAQLYWCVQQDNEQLARSGT
NCLENVVILNGEKFSLETWDKTCNCMLDIFKTTIPHALLTWRPAGAEGEPTTTQSLPDKQ
LDSISQKSVDIQSRSEDQHSISSADRVSMESRRQSQYSSAPGMYEDGSRSRTPTKVQEQR
LFSALLIKCVVQLELIQTIDNIVFFPATSKKEDAENFAAAQRDALYAADVPVETQDQGMY
RYLTSEQLFKLLDCLLESHCFAKAFNSNNEQRTLLWKAGFKGKSKPNLLKQETSSLACGL
RILFRMYTDKSRQDAWEEVQRRLLNVCSEAVAYFLALTSESHREAWTNLLLLFLTKVLKI
SDERFKAHASRYYPLLCEIMQFDLIPELRAVLRKFYLRIGLVFHIAQLPEPQPDPQPAHV
EQEADTEVGELAGEEAQ
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagggcaaaaagacgaaaaacatgttcctgacacgagctttggagaagattttg
gccgacaaggaggtgaaaaaggctcaccattcacaattgcggaaagcctgtgaggtggca
ctagaggaaatcaaagaggaatcagaaaaattaagtccacccagtggagacggcaaatcg
ggttccagcactttaccgccaatcaaatcaaagaccaacttcattgaagctgacaagtac
ttcttgccgtttgagctggcatgtcagtccaaatgtccccgcatcgtcatcacctcactc
gactgtttacagaagctgatagcatatggccacttgacgggcagtgccccggacagcacg
gccccgggcaagaagctcatcgacaggatcatcgagaccatctgcgcttgcttccagggg
ccacagaccgatgagggcgtgcaactacagattatcaaggctctgttgacagcagtgacc
tcccagcacatagaaatccacgagggcaccgtcctgcaggccgtccgcacgtgctacaac
atctacctggctagcaagaatctcatcaaccaaaccacagcgaaggccaccctcacacag
atgctcaacgtcatctttgcacgcatggagaatcaagcattgcaggaagcaaagcagctg
gagagagagcggcaccggcagcactcgccggtcacccagcacactgagcctgactccccc
cagctacagactcacatccacccgccagccaagggtatgatccaggaagccaacgggccc
gtcactccgccaactccaagcaccaacatcccatccaccccatcaaccccctccacaccg
gccccggagggcggcagcaggtccgtgtctggggagcaggaggagcagagggagcaggag
gagcagggagagcaggggtcagtctacgagagcccagatccagaaaacggttctggcttt
tgtgtggcagagaatgaacagactgaggcagaccaagccacagcagcagctcagaatgca
gctgcccagcagcatccagaggcaggcgatgaggaggaagaggaagaaaccccaaactat
gaggagaaagcccaggaaattgtccagagtatcctacaggaggtggtcaacactgttgca
ggagggcactgcctggaccctgcaaacctctgctcggacactaaggagtccggtgttgag
agcgagcaggcagagtcggagccagctgaagcagtgacagagggcacccagtgctccatg
gaggacgagggcaccctgggcagcgacagtgagcacgtccatgccaatggcatccccggc
acgcctatttccgccagcttcaccccttcgctgcctgatgacagactgtctctctcgtcc
aatgacactcaggaatccggagcagcaccgggccagccacctggtgctaaattctcccac
atcctccagaaagatgccttccttgtctttcgctcactctgcaagctgtcgatgaagccg
ctgtcagacggaccacctgatcccaagtcccacgagctgcgatcgaaggtcttgtccctc
cagctgctgctgtccatactgcagaacgccgggcccatcttcaagaccaacgagatgttc
atcaacgccatcaagcagtacctgtgtgtggccctgtctaagaatggtgtctcatctgtg
cctgaggtctttgaactgtccctatccattttcctcacgctgctctcccacttcaagacg
cacctcaagatgcaaattgaggtgttcttcaaggagattttcttgtacatccttgaaact
tccacaagctcctacgaccacaagtggatggttatacaaaccctcactagaatatgtgca
gatgcccagagtgtggtggacatctatgtgaactacgattgtgacttgaatgctgctaac
atatttgagcgattggtcaacgacctctcgaagattgcgcaggggcgcggaggccacgag
ctcggcacaacacccctgcaggagctgaccctgagaaagaaaggccttgaatgtctagtg
tccatcctgaaatgtatggtagagtggagtaaggatcaatatgtcaaccccaactcccag
accagcctcggtcaggagaaaccgtcagagcaggagagcacagagacaaaggccccggag
accataaaccgctatgggagcattaactccctggactccacagcctcctctggcatcggc
agctatagcactcagatgtcagggactgataaccccgaacagtttgaggtcctcaaacag
caaaaagagataatcgagcaagggattgacctgttcaacaagaaaccaaagagaggaata
cagtatcttcaagagcaaggcatgctgggtaccaccccagaagaccttgctcagttcttg
caccaagaagagaggcttgattcgactcaagtgggagaattcctcggggataatgatcgt
ttcaataaagaggtgatgtacgcctacgtagatcaaatggacttccagggcaaagacttt
gtttctgcactgaggatgttcctggagggcttcaggctccctggagaagcccagaagatc
gaccggcttatggagaaatttgcagcaagatatcttgaatgcaatcaagggcaaactctc
tttgccagcgctgacacggcatacgtccttgcctactcaatcatcatgttgacaacggac
cttcacagtccacaggtgaaaaataaaatgacaaaagagcaatacatcaagatgaaccgc
ggcatcaacgacagcaaagacttacctgaggagtatctctcggccatctacgacgagatc
gcgggcaaaaagattgccatgaaggagacaaaagagctcaccatgaaatccaacaagcag
agtgtggccagtgagaagcagaggcgtctgctgtacaacgtggagatggagcagatggca
aagacagccaaagcgctgatggaggctgtcagccacgttcaggcgccattcaccagcgcc
acacatctggagcatgtcaggcccatgttcaagctggcatggacacccttcctggctgct
ttcagcgtgggtcttcaggactgtgacgacactgaggtggcctcactgtgtcttgaaggg
atccgctgtgctatcaggatagcgtgcatcttctctatacagttggagagagatgcgtat
gtgcaagccctggccaggttcaccctgctgacggccagctctggcatctcagagatgaag
cagaagaatatcgacaccatcaagacgctcatcactgtggctcacactgatggcaactac
ctgggaaactcctggcacgagatcatgaagtgcatcagtcagctggagctggctcagcta
atcggtacaggggtgaaggcacgctatatctcagggacagtgcggagcaaagaaggcttt
ttaacaagtaccaaggagcaaagcaacgacgagtacctgggtctagttggagggacagtg
gacagaaagcagattgccagcatccaggagtccatcggagagaccagctctcagagtgtg
gtggtggctgtggacaggatattcacaggctctaccagactggatggcaatgcaatagtt
gattttgtgcgctggctgtgtgctgtgtccatggatgagctggcctcgcccacacaccca
cgtatgttcagcctgcagaaaatagtggagatctcctactacaacatgggccgcatcagg
ctgcagtggtccaggatctgggaagttattggagaccacttcaacaaggtcggctgtagc
accaatgaagatgtggccattttcgcagtcgactctctcaggcaactatccatgaaattt
ttggagaagggggagctggccaactttagattccagaaagactttctgaggccgtttgag
cacatcatgaaaaagaacagatctcccaccatcagagacatggtggtacgctgcatagcc
cagatggttaactcccaggctgcaaacatccgctcaggctggaagaacatcttctctgtc
ttccacctggctgcatctgaccaggatgagagcattgtggagctggcctttcagaccaca
ggccacatcgtcacgaatgtatttgaaaagcactttgcggccaccatcgactccttccag
gatgccgttaagtgtctgtcggagttcgcctgtaatgcctccttcccagacaccagcatg
gaagccatccgcctcattagacactgcgccaaatacgtctcagagaggccacaggctttc
aaagactacaccagtgatgacatgaatgtagcgcccgaggaccgggtgtgggtgaggggg
tggttccccattctcttcgagctctcctgcatcatcaacaggtgtaaattggatgtcagg
accagggggctgacagtgatgtttgaagtgatgaagacctacgggcacacctttgagaag
cactggtggcaagacctgttcagaattgtcttcaggatctttgataacatgaagctgccc
gagcaacaaactgagaaagcagagtggatgaccaccacctgcaaccatgcactttatgcc
atctgtgatgtcttcactcaatactttgagtccctcaatgacgtcctgctggatgacatc
ctggctcagctctactggtgtgtgcagcaagataacgagcagcttgcccgttcaggcacc
aactgtctggagaacgtggtcatcctgaacggagagaagttttccctggagacctgggac
aagacatgtaactgtatgctggacatcttcaaaaccaccatcccccatgcgctgttaaca
tggagaccagcaggagcagagggagaacccacgaccacacagagtctaccagacaaacag
ctggactccatttcccagaaatcagtggacatccagtctcgctctgaggaccagcattcc
atcagtagcgctgatagggtttccatggagagccgtcggcagagtcagtacagttcagct
ccaggcatgtatgaggacggctccaggagcaggaccccaacaaaggtccaggagcagcgc
ttattctcagctttgctgataaagtgtgtggtgcagctggagctgatccagactattgat
aacatcgtcttttttcctgctaccagtaagaaggaagatgctgagaactttgcagcagct
cagcgagacgctctgtatgcagcggacgtcccagtggagactcaggaccagggcatgtat
cgctacctgacctctgagcagctcttcaaactactagactgcctgctggagtcacactgc
tttgccaaggctttcaactccaacaatgagcagaggactttactgtggaaagcaggattc
aaaggaaagtcgaagcccaacctgttgaagcaggagaccagcagcctggcgtgcggcctg
cgtatcctgtttcgcatgtacacagacaagagccgccaggatgcctgggaggaagtccag
agacgactgctcaatgtgtgcagtgaggctgttgcgtacttcttggctttgacctcagag
agccacagagaggcctggaccaacctgctgctcctcttcctcaccaaggtgctaaagatc
agtgatgaaaggtttaaggcccatgcctccagatactaccctctgctgtgcgagatcatg
cagttcgacctgatccctgagctccgggctgtcctacgaaagttttacctgcgtatcgga
ctcgtgtttcacatcgcgcagctgcctgagccccagccggaccctcagccggcgcacgtc
gagcaggaggcagacacggaggtgggagagttggccggggaggaggcccagtga
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