KEGG   Scomber scombrus (Atlantic mackerel): 134001989
Entry
134001989         CDS       T10651                                 
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6
  KO
K22753  E3 ubiquitin-protein ligase RNF6 [EC:2.3.2.27]
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssco04121]
    134001989 (rnf6)
Enzymes [BR:ssco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     134001989 (rnf6)
Ubiquitin system [BR:ssco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    134001989 (rnf6)
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4_2 zf-RING_11 zf-C3HC4 zf-ANAPC11 zf-RING_5 zf-C3HC4_3 zf-RING_UBOX zf-RING_4 zf-RING-like zf-RING_16
Other DBs
NCBI-GeneID: 134001989
NCBI-ProteinID: XP_062297199
LinkDB
Position
20:14057642..14063438
AA seq 716 aa
MDPPGGGDERRRQAERLRREEAYYHFINELSEEEYRLMRDSNLLGTPGEVTAEELRQRLD
GAKERVSSQPRTEQRLQTADSVEQQGSSGEGEERGAGGRRGAGGTEPGAETSNGDSLLEW
LNTFRRTGNATRSGQSGNQTWRAVSRTNPNSGEFRFSLEININHDQPEPGEHNDSSDTAE
LPVTAPNTTSPSLRTASSFSNPRPSTTPRPAPYPSPRPALIRRIQTRRTRSSTTTLSMSP
PALPAPVPPPAQRRGATLHSLVPPSTVTPPLDQTTPSQHQPLNAEVEQGRDDMTVSLDCP
RVSPQSGSQAPAAGHESRGSRTRSRGRSRRVAAGGGVSSRLSRRSRSPLHRTPVPSTTPP
SSSGVSGSSIHTVEPGSGTSSVSMETGEAVAEPAALTEPAVETVERENESHITGAGSSAV
RRHPTIMLDLQVRRIRPGENRDRDSIASRTRSRARVAENTVTFESDSGGFRRTISRSERA
GIRTYVSTIRIPLRRISETGLGEPNSTALRSILRQIMTGFGELSSLMETEADSETVAPSH
IDVGSTNSSTSPASRLHTNESAAGQVGAGGADQERVGLVGSEEDQGGQARLGGAVVSTTE
GRATSRDTNNLVENGTLPILRLAHFFLLNDEEDDEHPRGLTKEQIDNLATRTYGQASLEG
EMGRACSVCINEYAQGNKLRRLPCSHEFHIHCIDRWLSENNTCPICRQPILAVHHD
NT seq 2151 nt   +upstreamnt  +downstreamnt
atggaccctcctggtgggggagacgaacggcggaggcaggcagagcgtcttcgaagggag
gaggcatactatcacttcattaatgaactgagtgaagaggaataccgcctaatgagagac
agcaacctgctgggcacgcctggtgaggtgacggctgaggagcttcggcagcgtcttgat
ggagcgaaggagcgtgtgtcatctcagcctcgtactgagcaacgcttgcagactgctgat
tcagttgagcagcagggcagcagtggcgaaggagaagagagaggggctggagggagacga
ggagcagggggcacagagcctggagcagaaacctctaatggtgactcattactggagtgg
ctgaacactttcagacgcacaggtaatgctactcgcagtgggcagagtggaaaccagaca
tggcgtgctgttagccggaccaaccccaacagtggggaattccgatttagcctggagatc
aacataaaccacgatcagccagagccaggagagcacaatgactcctcggacaccgcagag
ctgccagtaactgccccaaacacgacttcaccctctctacgcactgcttcttccttctcc
aaccctcgaccgtcaaccacacctaggccagctccttacccctctcctcgcccagccctc
attagaaggattcaaacacgtcgcacacgcagcagcactaccactctttctatgagcccc
cctgcacttcctgctccagtgcctcctcctgctcagaggagaggtgctactttgcactct
ttagtaccgccttccactgttacccctcctcttgatcagactacaccttcacaacatcaa
cctttgaatgcagaagtggagcaggggcgtgatgatatgactgtatctttagactgccct
cgtgtttcaccccagtctgggtctcaagccccagcggcaggacacgaatcacgtggcagt
aggactcgatcacgtggacgttcacgcagggttgcagcaggaggtggggtttcatcccgc
ttgtcaaggcgaagtcgctcccccttacacagaacccctgttcccagtaccactccacca
tccagcagtggtgtgagtggctctagcatccacactgttgagccaggcagtggcacaagc
tctgtttccatggagacaggggaggctgtggcagaacctgcagctctaacagagccggct
gtagagacagtagaacgtgagaatgagtctcacataacaggagcaggaagttcagcagtg
cgccggcaccctaccatcatgttggacctgcaggtgagaaggattcgacccggggaaaac
cgggaccgggacagcattgccagcagaacacgttcgcgtgcccgggttgcagagaatacc
gttacatttgaaagtgacagtggtggatttagacgcaccatctcccgctctgagcgagct
gggatccgcacctatgtgagcacgatccggattccactgcgacgcatcagtgagacaggc
ctcggggagcccaactccactgcactgcgttccatcttgcgtcagattatgaccggtttt
ggggagctgagctctctaatggagacagaggctgattctgaaactgttgcacctagccac
atagatgttggtagtacaaatagtagcaccagcccagccagccgtctacacacaaatgag
agtgcagccggccaggttggtgcaggtggggcagatcaggagagggtgggactggtgggg
agtgaagaggaccagggaggccaggctaggctcggaggtgcagtagtgagcaccacagag
ggacgagccaccagcagagacactaacaacctggtagaaaacggtactctacccatcctg
cggttggcgcacttcttcttactgaatgatgaggaggatgacgaacaccctcgcggtctg
accaaagaacagattgacaatctggccacgcgtacctatggtcaggccagcctggagggg
gagatgggccgtgcatgcagtgtctgcatcaacgagtatgcccagggcaacaagctgcgt
cgcctgccttgctcccacgaattccacatccactgcatcgaccgctggctctctgaaaac
aacacctgccccatctgcaggcagcccattctggcagtgcatcatgactga

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