Scomber scombrus (Atlantic mackerel): 134002245
Help
Entry
134002245 CDS
T10651
Name
(RefSeq) guanine nucleotide exchange factor VAV3
KO
K05730
guanine nucleotide exchange factor VAV
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134002245
09142 Cell motility
04810 Regulation of actin cytoskeleton
134002245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
CAMSAP_CH
SH3_2
SH3_1
CH
SH2
SH3_9
SOS1_NGEF_PH
PH
C1_1
RHG20_PH
CDC24
DUF7063
SH2_1
KinB_sensor
PH_10
Prok-RING_1
ANC1_spectrin
C1_2
Motif
Other DBs
NCBI-GeneID:
134002245
NCBI-ProteinID:
XP_062297534
LinkDB
All DBs
Position
20:complement(8342632..8428132)
Genome browser
AA seq
837 aa
AA seq
DB search
MMEYWRQCALWLINCKVLPVNHRVTWESAQVFDLAQTLRDGVLLCHLLNNMRPQSINLKE
INLRPQMSQFLCLKNIRTFLAACSDIFGMKKSELFEAFDLFDVRDFGKVMDTLSKLSHTA
IAQQTGLRPFPTEESVEDEDIYNHLEDLIDENGVEDEDDLYDCVYDDEDGGEIYEDLMKT
EVIPPPTFQKQVETDIRSCCLTEIKQTEEKYTETLESIEKHFMTPLTTFLTHVEMENVFV
NVPELVKVHKGLLVEIQESVQQRSAQNLYQIFITFKERLLIYGKYCSHVETSIATLDTIC
KDREDVRMKLEECSKRANYGKFTLRDLLVVPMQRVLKYHLLLQELMKHTHDATDKTNLRK
ALDAMKDLAQYVNEVKRDNETLREIDQYQRSIENLNQPLINYGRPKVDGEVRVASVDKRA
KQDRHIFLFDAAVIVCKRRGDNYEMKEVIDLHLFKITNNPTSDKENRKWSYGFYLTHNQG
QSGFEFFFKTKELKKKWLEQFGMAISNIRPENATSNHHDFHMHTFDRITSCNSCHMLLRG
IFNQGYLCSKCGLGAHKECLGRLGSCGKTDPGSVRTQGKDRDPGLPKMVVIRNYFGVPSP
SSGPALNIQTGDIIELICADLHCPWWQGKILSTKEVGFFPSDAVKPCPCVPKPVDYSTQP
WFAGPMERLQAEAELINRVNSTYLVRHRSREFTEYAISIKYNNDVKHIKILTKEGCFYIA
ENKKFRSILELIEYYKHHSLREGFRSLDTTLQFPYREPENAAMHRINRLGGNMFAPKVIG
VAIARYDFSSRDTRELSLQEGDVVKIYTKSGANGWWRGEVNGRVGWFPSTYVEEGEE
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgatggagtattggaggcagtgcgcgctgtggttaataaactgcaaggtgcttccagtt
aaccaccgggttacatgggagtctgcacaggtatttgacttggcacaaaccctccgggat
ggggtcctcctctgccacctgctcaacaacatgagaccccagtccatcaacctaaaggag
attaacctccggcctcaaatgtcacagttcctgtgcctgaagaatatcaggaccttcctg
gcagcatgcagcgacatattcggcatgaagaaaagtgagctgtttgaggccttcgacctt
tttgacgtcagggactttggaaaggttatggacacactatctaaactttctcacacagcg
atcgcacagcaaactggactcaggccttttcctacagaagagagtgttgaagatgaggat
atctacaaccacttggaagaccttatagatgagaacggggtggaggatgaggacgatctc
tacgactgcgtgtatgacgatgaagatggcggagagatctatgaggacctgatgaagaca
gaagtcatccctcctccgacgttccagaaacaggtggagactgacatcaggagttgctgt
ttaacagagatcaagcagacagaggagaaatacactgaaaccctggagtctatagagaag
cacttcatgacgcccctcaccacgtttttaacccatgtcgagatggaaaatgtgtttgtg
aacgtcccggaactggttaaagttcacaaaggtttactagtggaaatccaagagtcagtc
caacagagaagtgcccagaacctttaccagatattcatcacgttcaaagagaggttgctg
atctacgggaaatactgcagccatgtggagacgtccatcgccactctggacaccatctgc
aaagacagagaggacgtacgcatgaagctagaggaatgttcaaagagagccaactatggc
aagttcacactgagggatctgcttgtggttcctatgcagcgagtcttgaagtatcacctt
cttctgcaggagctgatgaaacacactcatgatgccacagacaagaccaatctgcggaaa
gcactggacgcaatgaaggacttggctcagtatgtcaacgaagtcaagagagacaatgag
acgttgcgagaaatagatcagtaccagagatccatcgaaaacctgaatcaacctctgatt
aactacgggagacccaaagtcgacggggaggtacgggtggcctcagtggacaaacgagcc
aaacaggacagacacatcttcctgttcgatgctgcggtgatcgtttgtaagcggcgagga
gacaactacgagatgaaagaagtgatcgacctgcacctcttcaagatcacaaacaacccc
acatcggacaaggagaaccgaaagtggtcctacggattctacctcactcacaaccagggc
cagagcggctttgaattcttcttcaagaccaaagagctgaaaaagaagtggctggaacag
tttggcatggccatatccaacattcgtcctgagaatgcaacaagcaaccaccatgacttt
cacatgcacacctttgacagaatcacctcctgcaattcttgccacatgctactgaggggc
atctttaaccagggctacctgtgctccaagtgtggtttaggtgctcataaagaatgtctg
ggccgcttgggctcctgtggaaaaacagatcctggctccgtcagaactcagggcaaagat
cgagacccaggtttgcccaagatggtggttatcaggaactacttcggtgtgccgagcccc
tcttctggtccagcactcaacatccagacgggtgacatcatcgaattaatctgcgccgac
cttcactgcccctggtggcagggtaaaatcctgtcgacgaaagaggttggcttctttcca
agcgacgctgtgaagccttgcccatgtgtcccgaagcccgtcgattactccactcaacct
tggttcgcagggcccatggagaggctccaggcagaggcagaactcatcaacagggtcaac
agcacctacctagtccggcatcgcagcagagagttcacagaatacgccatcagcataaag
tacaacaacgacgtgaagcacataaagatcctgacgaaggagggctgcttctacatcgca
gagaacaagaagttcaggagcatattagagctgattgagtactacaaacaccactccctg
agagaaggtttcaggagtttggacacaacgttgcagtttccttaccgggaaccagagaat
gctgctatgcaccgcatcaaccggttgggtggcaacatgttcgctcccaaagtgatcggc
gtggcgatagcgcggtacgacttcagctcacgtgacacccgggagctctcactacaggag
ggtgacgtggtgaagatctacacaaagtcaggagccaatgggtggtggaggggcgaggtc
aacggcagggttggctggtttccgtccacatacgtagaggagggcgaagagtga
DBGET
integrated database retrieval system
