Scomber scombrus (Atlantic mackerel): 134002248
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Entry
134002248 CDS
T10651
Symbol
spata13
Name
(RefSeq) uncharacterized protein spata13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
134002248 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134002248 (spata13)
Membrane trafficking [BR:
ssco04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
134002248 (spata13)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
SH3_2
SH3_9
PH
DUF1604
Motif
Other DBs
NCBI-GeneID:
134002248
NCBI-ProteinID:
XP_062297539
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All DBs
Position
20:13883187..13897927
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AA seq
1292 aa
AA seq
DB search
MSRAEQKDRVLSTSEDSLPCLHNSKADPVIRSRPLSDLFPFQSHAERNAVPYLLSGCSAQ
VQPMTAGSLADENRLNGINSSAWSNPVIAQAEGKPHSSRIMRLFSSSKKAAVPSQSPSTD
SPTLTHSNDSSSGPQSWSGLQGLGVMDSFKKLRSSVLQGIQSKGATNHDGEHGPTSNQEM
ANGTVVNNIDPQLDDATNHLKIAEGVSVSNGNITGQKMAGMSQCGSDIEDYDDEENDDGD
GLQRNSRFSRSIRRAYGAGRISLLDTGNGRLAGRSTNETADTQKADQNSEVNAQTEYMSE
NTNVKVLSRLSKSAENLHIFKAPFRCKAPSPGPPSQQAYSQRMNTSNGTTNIQRTASASS
VDLRGHAGSHRKSPVKAKGQMLKLVGSMTDLTVRHRRSPSPSPTSPPTMSPLTRLHDDYS
RRVPCLTASERQRRPSPVRARVMSVEHNPLIHSEPEHDVSSQQHQVPVPVSLEPPKRTEE
TLPNTGVFAHSESFTVAIRNGNKQTENTECSSSTLSQEELSQSQERARFNSLSVKATSDH
QGQETLLQTEEVSPTTSSSTPPISPTCLSDSPTSPTSPTDAAAASTETSSVKPRRRSGRP
RPRPISDYAQLISRKHSIPEEVAERHAGQRTENASLHKDSSSNDECGNGESPESCTMNGN
IQGRRQRPISVMGVEDVYSADAEEKEDGLPSSLSRPPIPSHQVPPYRGVSARFRPSTLSQ
STPIGLDRVGRRKLHRVLSDGVSQCSATLDDSVSEEEEGSFDELTDVTAHLQPGVELAVL
NECISSGQTVYAEALWDHVTMEEQELAFKAGDVIRVVEAPDKDWWWGRGADKEGWFPSSF
VRVRVNQEDSSAESVESVTDQEDPTPRDTHSAQHKEQMRTNVVKEIMSTERIYIKHLRDI
CEGYIRQCNKHPDMFNELQLKTIFSNIEDIYKFQRQFLRDLEKKYNKEQPHLSEIGSCFL
LQGEGFSIYSDYCNTHPAACAELQRLMKSGRYKHFFEACRLLQQMIDISIAGFLLTPVQK
ICKYPLQLGELLKYTPKDHSDYSGVSKAYEAMKNVASLINERKRRLESIDTIAHWQVAIL
HWEGPDVLERSSELIHSGELTRVVRQGKMQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRL
DMDQTEVLDMPDGRDSDLGLTLKNALRLRHASTLELMCVLCCRKAEDKQRWLQAFAKERH
RIKEDQEMGMEISEEQRKQAIVNARRAKHGKIKSIGYGGPVPPHQNLHPLHQRHITIPTS
VPQQQVFSLAEPPKRKPYHLLYSITRNAFFKK
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgagcagggcagaacaaaaggacagagtcttgtccacaagcgaagactctctcccgtgc
ctccacaactctaaagctgacccagtgattcggagccgacctctcagtgatttattccct
ttccagagtcatgctgagagaaatgcagtcccatatctgctgtctgggtgcagtgcccaa
gtacaaccaatgactgcaggttctcttgccgatgagaaccgattgaatggtatcaactcc
tccgcctggtccaaccctgttatagctcaagctgaaggaaagccccactcctcaagaata
atgcggcttttttctagctcgaaaaaggccgctgttccttctcagagtccaagcactgat
agtcccactttaacccacagcaatgacagcagcagcggcccccagtcctggtctggactc
caaggactgggcgtcatggactccttcaaaaaactgcgctcctctgtgctccagggcatc
cagagtaaaggggcaaccaaccatgatggagagcatgggcctacatccaatcaggaaatg
gctaatggcacagttgtcaacaacattgaccctcagctagatgatgcaacaaatcattta
aagattgcagaaggtgtctctgtgtctaatggaaatattactggccaaaagatggctgga
atgagtcagtgtggctcagacattgaggactacgatgatgaggaaaatgatgatggagat
ggcctccaaaggaattcgcgcttctcaaggagtatcaggagagcgtacggggcaggacgc
atctctttacttgacacagggaatgggagactagcagggagaagcacaaatgaaactgca
gacactcaaaaagcagatcaaaactctgaggtcaatgcccaaacagagtacatgagtgag
aacacaaatgtgaaggtgctgagcagactgagcaaaagtgcagagaaccttcatatattt
aaggcacctttcagatgcaaagctccatctccaggccctccttcacaacaggcatactcc
cagaggatgaacacatcaaatgggacgacaaacatccagaggacagccagtgcctcctca
gtggacctccgaggccacgctggtagccacagaaagagccctgtgaaggccaaggggcag
atgctgaagctagtaggcagcatgactgacttaactgtccgtcacagacgaagtccctcc
cccagccctacttctccacctaccatgtcacccctgacccgtctccatgatgactactcc
cgccgtgtgccttgtctaacagccagtgagagacagcgccggccctcgcccgtcagagct
cgggttatgtccgttgaacacaacccactaattcactcagagcctgaacatgacgtcagt
tcacagcagcaccaggtcccggttccagtttctttggagcccccaaagagaacagaagag
actttgcctaacactggtgtcttcgctcattcagaatctttcactgttgcaataagaaat
ggtaataaacagacagagaatacagaatgcagttcatctacgctcagccaagaagagctg
tcacaaagccaagaacgggcgaggttcaactcactatcagttaaggcgacatcagatcac
caaggacaagaaacacttctccaaacagaggaagtctcaccaacaaccagcagcagcacc
cctcccatctccccaacgtgcctctctgactcacccacatcacccacatcgcccacagat
gcagctgcggcttccacagaaacatcctccgtcaagcccagacgaagaagtgggcgccca
agacctcggccaatctcggattatgcacagctcatttccaggaagcactccattccagag
gaagtggcagagcggcatgccgggcaaaggacagaaaatgcatcactgcataaagacagc
agtagtaatgatgagtgcgggaatggggagagtcctgagagctgtaccatgaacggcaac
attcagggcaggaggcagcggcccatctcagtgatgggagttgaggatgtgtattctgct
gatgcggaggagaaggaggacggccttccttcttccctgtcacggccacccatcccctcc
caccaggtgcccccctatcgaggagtgtctgccaggtttcggccctccaccctctcccag
agcacccccatcggactggaccgcgttggacggcgcaagcttcacagagtgcttagcgat
ggtgtgtctcagtgctcagcaacacttgatgacagcgtgagtgaggaggaggagggcagc
tttgatgagctgactgatgtcacagcccacctccagccaggggtggagctcgctgtgctc
aatgagtgtataagctctggccagacggtgtatgctgaggcactctgggaccatgtgacc
atggaggagcaggagctggccttcaaggctggagatgttatccgtgtagtggaagcccca
gacaaggattggtggtggggcaggggtgctgacaaggagggctggttcccctccagtttt
gtgcgggtgcgtgtgaaccaggaggactcgagtgcagaaagtgtggagagcgtaacagac
caggaagatccaactccaagggacacacacagtgcccagcacaaggagcagatgagaacc
aatgtggttaaggaaatcatgagcactgaacgtatctacatcaagcacctgcgggacatc
tgtgagggttacatccgtcagtgcaataaacacccggacatgttcaatgagctgcagttg
aagaccatattcagcaacatagaggacatctacaagttccagaggcagttccttcgagac
ctggagaagaagtacaacaaagagcaacctcatctcagtgaaataggatcttgctttctc
ctgcagggggagggcttttctatctactcagactactgcaacactcatccagccgcctgt
gcggagctgcagcgcctcatgaagtcggggcgatataagcatttctttgaggcctgtcga
ctccttcagcagatgattgacatttccatagctggtttcttgctcacacccgtccagaag
atttgtaaataccccctgcagctgggagaactgctcaagtacacccccaaagaccacagt
gactacagtggagtgagcaaagcatatgaagcaatgaagaatgttgccagtctgatcaat
gagaggaagagaaggctggagagtattgacaccatcgctcactggcaggtcgccattcta
cactgggagggacctgatgtgctagagcgcagctcagagctgatccactctggtgagctg
actcgagtagtccggcaaggcaaaatgcagcagcgcagcttcttcctttttgaccaccag
ctggtcttctgcaaaaaagatgtcctgcgtagggacctgctccactatcgtggacgactg
gatatggaccagaccgaggtgctggacatgcctgacgggcgggactcagacctgggtctg
accctaaagaatgcgctgcgcctgcgccacgcctccactctggagttaatgtgtgtgctg
tgctgcaggaaggctgaggacaagcagaggtggttacaggcctttgccaaggagagacac
agaatcaaggaggaccaagagatgggaatggagatcagtgaagagcaaagaaaacaggcc
attgtcaatgccagaagagccaaacacgggaagatcaaatccataggttacggcggtcct
gtcccaccacaccaaaaccttcacccacttcaccagcgtcacatcaccattccaaccagt
gtgcctcaacagcaggtcttttcactggcagagcccccaaaacgaaagccttatcacctg
ttgtacagcatcacccgcaacgcctttttcaagaaatga
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