Scomber scombrus (Atlantic mackerel): 134002306
Help
Entry
134002306 CDS
T10651
Symbol
shha
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
134002306 (shha)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
134002306 (shha)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
134002306 (shha)
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C46: hedgehog family
134002306 (shha)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Morphogens
134002306 (shha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Intein_splicing
Peptidase_M15_3
Vint
Ribosomal_S6e
DUF7764
Hom_end_hint
Motif
Other DBs
NCBI-GeneID:
134002306
NCBI-ProteinID:
XP_062297629
LinkDB
All DBs
Position
20:complement(15916711..15924739)
Genome browser
AA seq
414 aa
AA seq
DB search
MLLWTRIVLVGLICLSLVSSGMGCGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSERFKELTPNYNTDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPGV
KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKTGGCFPGSSSVTLQDGSTKAVKDLQTGDKVLAADDDGNPIYTDFIM
FIDQDSTTRRLFYVIETDAGQKIVLTAAHLLFVAHNSTDMDERRSAIFASEVQPGQKVFV
SDDERIRLEPVTVKRIYTEEHEGSFAPVTVQGTVVVDQVLASCYAVIEDHDLAHWALAPV
RLAHWVSSLLFSSQPQVSAQNDGVHWYSKILYQLGTWLLDSHSIHPLGMSVYSS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgctgctctggaccagaatcgtattggtcggtctcatctgcttgtccttggtgtcctct
gggatgggatgcggaccgggcaggggctacggcaggagaagacacccgaagaagctgaca
cctcttgcgtacaagcagttcatccccaacgtggcggagaagaccctcggggcaagtggc
agatacgaaggcaagatcacaagaaactccgagcgatttaaagaactgactcccaattat
aacacagacatcatattcaaggatgaggagaacactggtgccgacaggctaatgactcag
agatgtaaagacaagctgaactcgctggccatctcggtgatgaaccagtggcccggggtg
aagctgcgggtcaccgagggctgggacgaggacggacaccacttcgaggagtcgcttcac
tacgagggcagagcagtggacatcaccacctcggacagagacaagagcaaatacggcact
ctttccaggctagcggtggaagccggattcgactgggtctactatgaatcgaaagcccac
atccactgctctgtgaaagcagaaaactcagtggcagcaaaaactggtggttgcttccca
ggctcctcttcagtcaccctgcaggatggatccacgaaggcggttaaagacctccaaacc
ggcgacaaagtcctggcagcagatgacgatggaaacccgatttacactgatttcatcatg
ttcatagaccaagactcgacgaccaggaggctcttctatgtgatcgaaaccgacgccgga
cagaaaatcgtcctcaccgcggcgcacctcctcttcgtcgcccacaactccactgacatg
gacgagaggaggtcggcgatcttcgcgagcgaagtccaacctgggcaaaaggtgttcgtc
tctgacgacgagcgaattcgactcgagcctgtgaccgtaaaacggatttacacggaggaa
cacgagggctcgtttgcgccggtgaccgtccaggggaccgttgtggtggaccaggtcctt
gcgtcctgttacgcagtgattgaagaccacgacctggcgcactgggccctggcacctgtc
aggctcgcccactgggtgtcctcgttgcttttcagttcccagccacaagtcagtgcacag
aacgacggagtgcactggtactccaagatcctttatcaattaggaacatggctcttggac
agccactcgatccatccacttgggatgtcagtatactcgagttga
DBGET
integrated database retrieval system
