Scomber scombrus (Atlantic mackerel): 134002351
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Entry
134002351 CDS
T10651
Symbol
prpf4bb
Name
(RefSeq) pre-mRNA processing factor 4Bb isoform X1
KO
K08827
serine/threonine-protein kinase PRP4 [EC:
2.7.11.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssco01001
]
134002351 (prpf4bb)
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134002351 (prpf4bb)
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134002351 (prpf4bb)
Protein kinases [BR:
ssco01001
]
Serine/threonine kinases: CMGC group
DYRK family [OT]
134002351 (prpf4bb)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
134002351 (prpf4bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Pox_ser-thr_kin
CoV_S1_C
Pkinase_fungal
CSTF_C
Motif
Other DBs
NCBI-GeneID:
134002351
NCBI-ProteinID:
XP_062297678
LinkDB
All DBs
Position
20:20584005..20595671
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AA seq
1021 aa
AA seq
DB search
MADVEMDIASRRMNNGNEHVKQDLESHERSGNEDSGEMSEEEEEEEEEEAAETNGEKTQE
GPKHHSSSGGGKHKRKKHKHRSKHKKHKHVSDEDKDRKRKHRHKHRKHKRKEGSSPSGAV
IFGSSGHKKNESSPSSGNPSLDDRALLEDLEKQRAMIKAELDSQLMEGKVQSGMGLILQG
YNSGSEEDGEARVRNGEQRQRVSSGKPISPRGGKGGKSRRDSTEGSKTSSKRRSRSKSAE
RLPKEPKQDKVTKSTKDTGVKERGRGRSRSKDRKRSDSADRSKERAGKSNSPSSWRGEQK
GSRTEKRSSPQRDERPNQERAGRRSRSPGRERPTRLDADRDKRPTKSPSKDASSGKENRS
PHRRGLHSPVRKRSPSPRHRDAHHAPAGASDRASKLSNSPSRARSPPRRGRSRSPDLRRR
DVDRQDSPMRKRLRPDMGSARDRSRENSPRMAPRRRMSRSPLRRRSPSLRRRSRSSPRRR
SRSPLGHRSGERDRYGRLRQYRRSMSRDRDRRRRRSRDEDKFKGSLSEGMKVDQESSEGE
VLEDFDGEEVDEEALIEQRRQQRLAIVQKYKQGTDDNMMSEPSSPQSSTRSRSLSPDDIL
ERVAADVKEYERENLNTFEASIKAKHNLITQEKDGANPKKPSAPDMFTESDDMFAADFDS
ARMRAAGVGKDFKENPNLRDNWTDAEGYYRVNIGETLDKRYDVYGYTGQGVFSNVIRARD
TARAGQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
FEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNES
KTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKPYDYGIDMWSVGCTLHELYTGK
ILFPGSSNNHMIKLAMDLKGKMPNKMIRKGLFKDQHFDQNLNFLYIEVDKVTEREKVTVM
STINSTKDLLTDMIGCQRLPEDQRKKVMQLKDLIDGTLMLDPAKRITINQALQHPFIQEK
I
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgttgagatggatatcgcgtccagaagaatgaataatggcaacgaacacgtg
aagcaggatctggagagccatgagaggagcggtaatgaagacagcggagagatgtctgaa
gaagaagaggaggaggaagaggaggaggcggcggaaactaatggcgagaagacacaagag
gggcccaaacatcacagcagcagcggtggcggtaaacacaagaggaaaaaacataagcat
cgcagtaagcacaaaaaacacaagcatgtctccgatgaggacaaggaccgtaaacgcaag
caccgtcacaaacacagaaaacacaaacgcaaagagggctcctctccctccggtgctgtc
atctttggctcctccggccacaaaaaaaacgagtcctctccgtcctccggaaatccgagt
ctggacgacagggccttgctggaggatttggagaaacagagggcaatgattaaagctgag
ctggacagccagttgatggagggcaaggttcagtcgggtatgggtttgatccttcagggt
tacaactctggatcggaagaagatggagaagcgagggtgaggaatggagaacagcgtcaa
agggtcagctcaggtaaacccatatctccgaggggggggaaaggtggtaaatctagacgg
gactcaacagagggcagtaaaaccagctccaagcgtcgcagtcggagcaagtccgcagaa
aggcttcccaaagaacctaagcaggacaaggtgaccaaaagcaccaaggacacaggtgtt
aaagaacgaggccgcggcaggagcaggtcgaaagacaggaagcgctccgacagcgctgac
aggtccaaggagagagccgggaagtccaactccccctccagctggagaggcgagcagaaa
ggtagccgcactgagaaacgttcctcacctcagcgggacgagcgaccaaaccaggagaga
gcgggccggaggtccaggtcgcccggacgggagcggccgactcgcctggacgccgaccgc
gacaaacggccgaccaagtccccgtcgaaggacgcgtcgtcagggaaagagaaccgctcc
ccacacagacgagggcttcacagccccgtgaggaaacgcagcccctcccctcgccacaga
gacgcccaccacgccccggccggtgcctcagacagggcatccaaactgagtaattctccc
tccagagcaaggtcccccccgaggagaggccgcagccgctcgccagacctcaggaggagg
gacgttgacaggcaggactcaccaatgaggaagcgcctgcggccagatatgggctcagcc
agagatcgatcacgagagaacagtcccagaatggcccctcgccgcagaatgagtcgttca
cctctaagacggcggtctccgtctctacggcgacgctctcgctcttctccccgcaggcgg
agcaggtctcctctgggacacaggtctggggagagagaccgctacggtagactcagacag
tacagacgctcgatgtcccgcgacagagacaggagaagaagacgcagcagagatgaagac
aagttcaaaggcagcctatcagagggcatgaaggtcgaccaagaatcctcagaaggagaa
gtgttggaggactttgatggggaggaagtagatgaagaagccctcattgaacagcgcaga
cagcaacgcttggctattgtacagaaatacaagcaggggaccgatgacaacatgatgtcg
gagcccagcagcccgcagagcagcacccgcagccgctcgctctcgccagacgacatcctg
gagcgagtggcggcggacgtcaaggagtacgaacgcgagaacctcaacaccttcgaggcc
agcatcaaagccaagcataacctcatcacccaggagaaagacggagccaacccaaagaag
ccctcagcccctgacatgtttacagagtcggatgatatgttcgctgctgactttgatagt
gccaggatgagagcagcaggtgtaggaaaggacttcaaagagaaccccaacctcagggac
aactggaccgatgctgagggttactaccgggtgaatatcggcgagacactggacaagcgt
tacgacgtgtacggctacactggccagggtgtgttcagtaatgtcatcagagccagagac
actgccagagccggccaggaggtggcagtcaagatcatccgaaacaacgagctcatgcag
aagaccggtttgaaagagttagagttcctcaagaagctgaacgacgccgatcccgatgac
aagtttcactgcctacgcctcttcaggcacttctaccacaagcagcatctatgtctggta
ttcgagcctctcagtatgaatttgagagaggtgctgaagaaatatggtaaagatgtcggt
ctccacatcaaagcggtgcgctcttacagtcagcagctcttcttggccctaaagctgctc
aaaagatgcaacatcctccatgcagacatcaagccagacaacatcctggtgaacgagtca
aagaccattttgaagctatgtgattttggctctgcatcgcacgttgctgataacgacatc
actccgtacctggtcagcagattctacagagctccagaaatcatcataggaaaaccatac
gactacgggattgacatgtggtccgtcggctgcacgttacacgagctgtacaccggcaaa
atcctgttccccggatcttccaacaaccacatgatcaaactggcgatggacctcaagggc
aagatgccgaacaagatgattcgcaaaggcttgttcaaagaccagcacttcgatcagaat
ttgaacttcctgtacattgaagtagacaaagtaacagaaagggagaaggtgacggtgatg
agcaccatcaactccaccaaagacctgctgacagacatgataggatgccagcgactgccc
gaggaccagaggaagaaggtgatgcagctgaaggacctgatcgatggcaccctgatgttg
gacccagccaaacgcatcaccatcaaccaggctctgcaacacccctttatacaggagaag
atttga
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