Scomber scombrus (Atlantic mackerel): 134002363
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Entry
134002363 CDS
T10651
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134002363 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
134002363 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134002363 (lsm5)
03041 Spliceosome [BR:
ssco03041
]
134002363 (lsm5)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134002363 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
134002363 (lsm5)
Spliceosome [BR:
ssco03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
134002363 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
134002363
NCBI-ProteinID:
XP_062297689
LinkDB
All DBs
Position
20:complement(16669844..16672453)
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AA seq
91 aa
AA seq
DB search
MAATPTTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactccaactacaaacccctcacagctgctcccactcgagcttgtggacaaa
tgtatcggctctcggattcacatcgtcatgaaaaccgacaaagaaatcgtcggcaccctg
ctggggtttgatgactttgtcaacatggtcttagaggatgtgacagaatttgaaatcaca
ccagagggaaggaggataaccaaattggatcagattctgctcaatggcaataacatcact
atgctcatacctggaggagaaggccctgaagtatga
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