Scomber scombrus (Atlantic mackerel): 134002392
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Entry
134002392 CDS
T10651
Symbol
pigm
Name
(RefSeq) GPI mannosyltransferase 1
KO
K05284
GPI mannosyltransferase 1 subunit M [EC:2.4.1.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco00563
Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ssco01100
Metabolic pathways
Module
ssco_M00065
GPI-anchor biosynthesis, core oligosaccharide
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
134002392 (pigm)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
ssco01003
]
134002392 (pigm)
Glycosyltransferases [BR:
ssco01003
]
GPI-anchor biosynthesis
Core oligosaccharide
134002392 (pigm)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Mannosyl_trans
PIG-U
GT87
Motif
Other DBs
NCBI-GeneID:
134002392
NCBI-ProteinID:
XP_062297717
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Position
20:7537436..7541641
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AA seq
414 aa
AA seq
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MERLISKLTERHVLFTASFAIRLALVAYGDYQDKTMVVKFTDIDYHVFTDAARFITKGES
PYNRSTYRYTPLLAWLLTPNIYLSMVFGKIFFIVCDVLSGLLIYRILCLRGLRSETARKV
SSLWLLNPLPMGVSSRGNAESILAALVLGTLLCMEGRRLLWAAMLYGLSVHMKIYPITYA
LPIVLTLRTPDTRAGKDKEERRWRKVIRFCGSFLNRELFLFAIVSGGVFCILTAFFYYMY
GWEFLHETYLYHLTRRDIRHNFSPYFYMLYLTADSRWSQWLGLAAFLPQLILLLVASWTF
HRDLAFCCFLHTAIFVSFNKVCTSQYFLWYLCLLPLVIPHLTLSLKQGVGLLLLWFAGQA
IWLGPAYFLEFEGNNTFLLIWLAGLLFLIINCFVLIQVITHYKPTQTPKRPKVE
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctaatatccaagctcacagagagacatgtcctcttcacggcttcctttgct
atccggctggctttggtcgcttatggagattaccaagacaagaccatggtggtgaaattc
actgatattgactaccatgtgttcacagatgctgcaagattcattacgaagggtgagtcc
ccgtacaacagatcaacctaccgctacacccctcttctagcctggctgctcacccccaac
atctatctcagcatggtgtttggtaagatcttcttcatcgtatgtgatgtgctgtcagga
ctgctcatctacagaatcctctgcctgcgaggtctgcgctctgagactgcacgtaaggtt
tcttctctctggctcctcaacccgctgcccatgggagtatccagtcgagggaatgctgag
tccatcctggcagccctggtgctggggacattactctgtatggaaggccggcgtctgttg
tgggcagctatgctctatggtctttcggttcatatgaagatctaccctattacatacgcc
ctgcccattgttctgaccctgcgaacaccagataccagagcagggaaagacaaagaggag
cggagatggaggaaggtcattaggttttgtggaagtttcctcaaccgagagctgttcctc
ttcgcaattgtgtctggaggagttttctgcatcctcacagcattcttctattacatgtac
ggctgggagtttcttcatgagacctacttgtaccatctaaccagaagggacatcagacac
aacttctccccctacttctatatgctctacctcactgcagacagcaggtggagccagtgg
cttggccttgcagctttcctgccgcagctcatcctgctgttggtggcatcatggactttt
caccgggacctggccttctgctgtttcctgcacaccgccatctttgtctcttttaacaaa
gtctgcacctcacagtacttcctgtggtacctgtgtttactccctctggtcatccctcac
ctgactctgtcactcaaacagggagtgggtctgctgctcctctggtttgctggacaggct
atttggttgggcccagcctacttcctagagtttgaaggcaacaacaccttcctgctgatc
tggctggctggattgctcttcctgatcatcaactgcttcgtcttgattcaagtcataacc
cattacaaaccaacacagactccaaagagaccaaaggtggaatga
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