Scomber scombrus (Atlantic mackerel): 134002409
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Entry
134002409 CDS
T10651
Symbol
nrp1a
Name
(RefSeq) neuropilin-1a isoform X1
KO
K06724
neuropilin 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134002409 (nrp1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ssco04090
]
134002409 (nrp1a)
CD molecules [BR:
ssco04090
]
Proteins
134002409 (nrp1a)
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Gene cluster
GFIT
Motif
Pfam:
CUB
F5_F8_type_C
DUF3481
MAM
F5_F8_type_C_2
CUB_animal
DUF3789
Motif
Other DBs
NCBI-GeneID:
134002409
NCBI-ProteinID:
XP_062297735
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Position
20:complement(6079552..6141379)
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AA seq
936 aa
AA seq
DB search
MRNFIFCGDTTRMHCGLVFILFMGILLVVKAFKNDKCGGNIRISTANYLTSPGYPMSYPP
SQRCVWVITAPGPHQRILINFNPHFDLEDRECKYDYVEVRDGVDESGQLVGKYCGKIAPS
PVVSSGNQLFIKFVSDYETHGAGFSIRYEIFKTGPECSRNFTSNSGVIKSPGYPEKYPNN
LDCTFMIFAPKMSEIILEFESFELEPDPTPPTGVFCRYDRLEIWDGFPGVGPYVGRYCGQ
NTPGRIISYTGILALTINTDSAIAKEGFSANFTVIERTVPEDFDCRDPLGMESGEITSDQ
IMASSQYNPSWSPERSRLNYYENAWTPAEDSNKEWIQVDLGFLRFVSAIGTQGAISQETR
RVYFVKSYKVDVSSNGEDWITLKEGSKQKVFQGNTNPADVAKTMLPKPTLTRFIRIRPVT
WETGIALRFEVYGCKISEYPCSGMLGMVSGLITDNQITASSHTDRSWVPENARLLTSRTG
WTLLPQPQPFINEWLQVDLGEEKLVKGMIIQGGKHRENKVFMKKFRLGYTNNGSDWQMVL
DTNGNKPKIFEGNSNYDTPELRLVEPLLTRFIRIYPERATPAGMGLRLELLGCEIEAPTL
PPTTIVPSTTPSDDCDDDQASCHSGTGDDYDVTGGTTTPDTTTAEVDTIPAFLWFACDFG
WATDPSFCSWTSEDTGSKWQIQSSGTPTLNTGPNMDHTGGSGNFIYTLATGPQETEVARL
VSPMVGSPDTDLCVSFWYHMFGPHIGTLHIKQRKQTADGQADILLWTVSGHQGNRWREGR
VLVPRTNKPYQVVIEGLVERKSWGDIAVDDIKVLNGLSMTDCKDPDVPTEPMLPEDTFNG
IIEEITEYPDFVETNQISGAGNMLKTLDPILITIIAMSALGVFLGAICGVVLYCACSHGG
MSDRNLSALENYNFELVDGVKLKKDKLNVQSSYSEA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaattttattttttgtggcgatacaacaaggatgcattgtggattagtctttatc
ctgttcatgggaatcctcttggtggtcaaggctttcaaaaacgataaatgtggaggcaac
atcagaatctcaaccgccaactacctcacctcgccaggataccccatgtcttatccccct
tctcagagatgcgtttgggtgataacggcgcctggtccccaccagcggatcctcatcaac
ttcaatccgcattttgatctggaggaccgggagtgcaagtatgactatgtggaggtgcga
gatggagtggatgagagcggtcagctggtggggaagtactgcgggaagatcgccccttct
ccggtggtctcctctggaaaccagctcttcatcaagttcgtgtctgactacgagacccac
ggagcaggtttctccatccgatatgagatctttaagacaggtcctgaatgctccaggaac
ttcacctccaacagcggagtcataaagtcgcctggctaccccgagaaataccccaacaat
ctggactgcacgtttatgatcttcgccccgaagatgtccgagatcatcttggagttcgaa
agcttcgagttggagcctgacccgacgccccctactggcgtgttctgccgctacgacagg
cttgagatctgggatggcttccctggagtcgggccgtatgtcgggaggtactgtgggcag
aacactccgggcaggatcatctcttacaccggcatcctggcactgacaatcaacactgac
agcgccatcgctaaggagggcttctctgccaacttcaccgtcatcgaaaggaccgttcca
gaggactttgactgcagagaccccttgggaatggaatcgggagagataacatcggaccaa
atcatggcttcatcccagtacaacccaagctggtccccagagcgctccagactcaactac
tatgaaaatgcgtggactccggcagaggactcaaacaaggagtggatccaggtggatctc
gggttcttgcggttcgtctcggccatcggtacccagggcgccatctcccaggagaccagg
agggtttactttgtcaagtcttacaaagtggacgtcagctctaatggagaggattggatc
acgctgaaggagggctccaaacaaaaggttttccaaggcaacaccaacccagcagacgtt
gccaagacgatgctgcccaaacccacactgacgcgcttcatccggatccgtcccgttacc
tgggaaacaggcatcgcgctgcgcttcgaggtgtatggatgtaagatatcagagtaccca
tgctcgggcatgctgggcatggtatcgggcttgatcaccgacaaccagatcacagcgtcc
tctcacaccgatcggagctgggtaccggagaacgctcgcttgctgaccagccggaccggg
tggaccctgctccctcagccccaacctttcatcaatgaatggctgcaggtggatctgggt
gaggagaagctggtgaaggggatgatcatccagggagggaagcaccgtgagaacaaggtc
ttcatgaagaagttccgcctgggctacaccaacaacggctccgattggcagatggttttg
gacaccaacgggaacaagccaaagatatttgaagggaacagcaactacgacacacccgag
ctgaggttggtggagcccctgcttacccgattcatcagaatttacccggagagggccact
cctgccgggatggggctaagactggagctcctgggttgcgagattgaagctcccacattg
cctcctacaaccatcgtccctagcaccactccatccgacgactgcgacgacgaccaggcg
agctgccacagcggcacaggtgatgactacgatgtgacaggtggtaccacgacgccagac
accaccacagctgaagtggacactatcccagcattcctgtggtttgcctgtgacttcggc
tgggccactgacccgtccttctgcagctggacgtcagaggatactggctcaaagtggcag
atccagtccagtggtacccccaccctcaacaccggacccaacatggaccacacaggtgga
tcagggaacttcatctacacgttggcgacgggtccccaggagacggaggtggctcgactg
gtcagcccaatggtcggctccccggacacagacctgtgtgtgtccttttggtaccacatg
ttcggacctcatattggtacactgcatattaaacagcgcaaacagacagctgatggacag
gctgacatcttactgtggacagtcagtggtcaccaaggtaaccggtggagggaaggtcgc
gtccttgttccacgcacgaacaaaccctatcaggtggtgatcgaagggctggtggagaga
aagagctggggagacattgctgtggatgacattaaagttctcaatgggctcagcatgacg
gactgcaaagatccagacgtacccactgagcctatgttaccagaggataccttcaatgga
attattgaggagatcactgaatacccagactttgtggaaaccaaccagatcagcggagca
ggcaacatgctgaagacgctcgacccaatccttatcactatcatcgccatgtctgctctg
ggggtcttcctgggcgccatttgcggtgtggtcctgtactgcgcctgctcgcacggaggc
atgtcggacaggaacctatcagccctggaaaactataactttgaactggtggacggtgtc
aagctaaagaaggacaaactaaatgtacagagttcatactcagaggcgtga
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