Scomber scombrus (Atlantic mackerel): 134002410
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Entry
134002410 CDS
T10651
Symbol
itgb1a
Name
(RefSeq) integrin beta-1a
KO
K05719
integrin beta 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03271
Virion - Rotavirus
ssco04145
Phagosome
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04514
Cell adhesion molecules
ssco04530
Tight junction
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
ssco05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
134002410 (itgb1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134002410 (itgb1a)
04514 Cell adhesion molecules
134002410 (itgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
134002410 (itgb1a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
134002410 (itgb1a)
04530 Tight junction
134002410 (itgb1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134002410 (itgb1a)
04810 Regulation of actin cytoskeleton
134002410 (itgb1a)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
134002410 (itgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134002410 (itgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
134002410 (itgb1a)
04515 Cell adhesion molecules [BR:
ssco04515
]
134002410 (itgb1a)
04090 CD molecules [BR:
ssco04090
]
134002410 (itgb1a)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
134002410 (itgb1a)
Exosome [BR:
ssco04147
]
Exosomal proteins
Proteins found in most exosomes
134002410 (itgb1a)
Cell adhesion molecules [BR:
ssco04515
]
Integrins
Integrin beta subunits
134002410 (itgb1a)
CD molecules [BR:
ssco04090
]
Proteins
134002410 (itgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
134002410
NCBI-ProteinID:
XP_062297737
LinkDB
All DBs
Position
20:complement(6044283..6074237)
Genome browser
AA seq
797 aa
AA seq
DB search
MDLKLLLISALLGVFCNAQKEGNECINANAKYCGECIQAGAKCGWCTDPDFLKQGETVST
RCDELHSLLKRGCKVELIENPRGEQKILQDKKVTNRRKGPGKLKPEEITQIQPQKLSLTL
RSGEPQSFNLTFKRAEDYPIDLYYLMDLSYSMKDDLENVKNLGTSLMLEMSKITSDFRIG
FGSFVEKTVMPYISTTPAKLLNPCTGDQNCTSPFSYKNVLKLTSDGKKFNTLVGQQHISG
NLDSPEGGFDAIMQVAVCGDQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKCHL
ENNIYTMSHYYDYPSIAHLVQKLSDNNIQTIFAVTEEFQPVYQELKNLIPKSAVGTLSAN
SSNVINLIIDAYNSLSSEVILENSKLPDGVTIAYTSRCKNGMVSEGESGRKCSNISIGDE
VTFTISVTSKGCPKEGKPETIKIKPLGFTEEVEITLKFICECECHKDGIKNSKLCHFGNG
TYECGACKCNEGRVGRQCECSSNDVATEDMDRTCRKDNGTDICSNNGDCVCGTCECKKRD
NPEERYSGLYCECDNFNCDRSGNKLCGGHGRCDCRVCFCDPNWTGSACDCSLDTNTCLAS
NKQICNGRGKCECGTCKCTDPKFQGPTCETCPTCPGVCDEHKECVQCRAFGTGEKKDTCE
RDCSDFNLIKVKDRDKLPQPNDASYPVMHCKERDANDCWFYYTYAVNNNTEKEVHVVETL
DCPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENP
IYKSAVTTVVNPKYEGK
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggacctgaagctactcttgatatcggccttgttaggagtcttctgtaatgctcagaaa
gaggggaacgagtgcatcaatgccaacgccaaatactgcggggagtgcatccaggctgga
gccaaatgtggctggtgtacagatccagacttcctgaaacagggcgagaccgtgtcgaca
cggtgcgatgagctgcactctctgttgaaaaggggatgtaaggtggaattgattgagaac
ccgcgtggagaacagaagatccttcaggacaaaaaggtgacaaatcgcagaaagggacca
ggcaaactgaaaccagaggaaatcactcagatccagccccagaagctcagcctcaccctc
cgatctggagagccacaatctttcaacttgacgttcaaacgagcggaagattatcccatc
gacctgtactacttgatggacctctcctactccatgaaggacgatctggagaatgtcaag
aacctgggaaccagtttgatgctggagatgtcaaagatcacctctgactttaggataggc
tttggttcctttgtggagaagacagtgatgccttacatcagcaccaccccggccaagctg
ctgaacccgtgcaccggcgaccagaactgcaccagccccttcagctacaagaacgtcctg
aagctgaccagcgacggcaagaagttcaacaccctggtgggtcagcagcacatctccgga
aacctggactcacctgaggggggcttcgatgccatcatgcaagtggctgtgtgtggggat
cagatcggttggaggaatgtgactcgcttgctggtgttctccactgacgccggcttccac
tttgccggagatggcaagctgggtggaatcgtactgcccaacgatggaaaatgccacttg
gagaacaacatctacaccatgagccactactatgactatccctccattgctcacctggtt
cagaagctgagcgacaacaacattcagaccatctttgcagtcacagaggagttccagcct
gtttaccaagagctgaaaaatctgataccaaagtctgcagtgggaaccctgtctgccaac
tcaagcaatgtaatcaacctcattatagatgcctacaattctctctcctccgaggtcatt
ctggagaacagcaagcttccagatggagtgaccatagcttacacgtcccgctgtaagaac
gggatggttagcgaaggcgaaagtggacgcaagtgctctaatatctccattggtgatgag
gtcacatttaccatcagcgtgacatctaaaggctgtccaaaggaaggcaagcctgagacc
atcaagataaaacctctggggttcacagaggaggtggagattactctcaaattcatctgc
gagtgtgaatgccacaaagatggtatcaagaacagtaaactctgccactttggcaacggg
acttatgaatgcggagcctgcaaatgtaatgaaggacgtgtgggcagacagtgcgagtgc
agcagcaacgacgtggcgacagaggatatggaccggacctgccgcaaagacaacggcacc
gacatctgcagcaacaacggagactgcgtgtgcggcacatgtgagtgcaagaagagagac
aaccccgaggagaggtacagcgggctgtactgcgagtgtgacaacttcaactgcgaccgc
tctggaaacaaactgtgtggaggacatggacgctgtgattgcagggtgtgtttctgtgat
cccaattggaccgggagcgcctgtgactgctctctggataccaacacgtgtctggccagc
aataagcagatctgtaatggtagagggaagtgcgagtgtggcacctgtaagtgcaccgac
cccaaattccagggtcccacctgtgaaacctgccccacctgtccaggagtgtgtgacgaa
cacaaagagtgcgtccagtgtcgggccttcggcaccggggagaagaaggacacgtgcgaa
cgcgactgcagcgacttcaacctgattaaagtgaaggacagggacaagctgcctcagccc
aatgacgcctcctaccctgtgatgcactgcaaggagagggacgccaatgactgctggttc
tactacacctacgcggtcaacaacaacacggagaaggaggtccatgtggtggagactctg
gactgccccgccggtcctgacatcatccccatcgtggcgggggtggtcgccggcatcgtc
ctcatcggcttagccctgctgctcatctggaaactgctgatgatcatccacgacaggaga
gagttcgccaagtttgagaaggagaagatgaacgccaaatgggatacgggtgaaaatccc
atctacaaaagcgccgtcacaactgtggtcaatcccaaatacgaaggcaaatga
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integrated database retrieval system
