Scomber scombrus (Atlantic mackerel): 134002421
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Entry
134002421 CDS
T10651
Name
(RefSeq) basic helix-loop-helix domain-containing protein USF3
Organism
ssco Scomber scombrus (Atlantic mackerel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
134002421
NCBI-ProteinID:
XP_062297748
LinkDB
All DBs
Position
20:complement(14185912..14196614)
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AA seq
2336 aa
AA seq
DB search
MPEMTETQTPGRKPKKKKNKESHNAVERHRKEKINAGINRIGNLLPCSQSLKQSKNMILD
QAFRYITELKKQNDTMLLEGGDKVQAEEIRRMRRQLEEMRKESAHYIELLKAHDINLLED
PTIHWKGKQRCAKVAKVTPTHQLPKGIIVYSNGNVMCPAGKETSPRKQPSETLILQPPSD
VSAGLRVNGALLQVNTSTSTPALLPGSTVTPTQSTPGLRVVEQCVIEKPAAAPTLPPSVS
YITLQLPTVPTTLPQQPQPAVLAQTLSIAATSASQLPTESPAPPVSIHTTLTQTVATSRA
PASEVCSWVTEDTAIRNVSYTAIPNNQTLLTAAATGNTRTTWTTLQMAGNTVHPVCQSLP
TPEVSNISQAVQQVTVCPMGNKPSVQPIQIQMQPHVSVQQAPITAHIQAQPFQRPPQLRP
AILNQAQPILAPQTQCAVLPKPAVVAHPAIVSQPQSAVLQPASLVPHPPTALIPQPQTLP
QTALVPQPQATVLPLLQTMQVLQVNPTGGSASGVTAPQNTNNNNPSVVFLQQANACPSQS
VIREEVTNQTPCQHIVIIQAPNQAAPAPQNPQVGMVPAALPAAVPALPTQIPTTSSSTSP
TSLQSVGGKQLVHILPRPVQPQMNHPLQVTQASTSPTVPPTPQTITVNGQVFALQPMKTS
EKASSQGGQSTLQLVQPITTEEPTTNVALNSLGALSSLNQSISQGLPLTISSQNNCQPPA
APSSLVQQKQQQPPAPAPLPVTTLALPVRQLQVPSLSPVKSGPVVNASKPSAKRRRTAVN
TKRLTAKRNKPAKKKELSQVQPAVTVSAKPAAAAEEDQTVIVSQCSTVKVTDIPPTCTTA
VATTDCSKAIGNVTSTQTTLKMIVCSPSSGPSVLSQSHTQGKSSVSATQSDVLFSHTNTS
GMAAAVTTVSATSVKPSVSTTVAIESKSAVVSEVKQLSTSTPTSTTQSKSAAPSAVSRQS
RSVVSSAGATAAQYTSTTVSSACLTPVCPSATASVSLNQATQPTSVCHSQRSSTQDPLTC
NKPESQPTTSPSVSTTLTLSSTAPTFSAAHSSVTAPTTSSEFRKRVTTTRAPTQQTVVNM
PILPPCHPAEVKPPQHPGRNSEVEDGRHSAAAAEKEGLVTATSDTPSRKDFVPSQQVYTN
LDDQTIDHPMTSSRQTDSPMSTGAGGGRGFSVASMLPQGHSISASSSSFGTFTFTSEQAE
MLALVMLEQDSPGRRTGGCSGENTASTNPTTATWEPPKTSIVSSSKERGSIGQQQAKVTK
PMDTVTVKPAVQVSVRGQVGEGSVSGPSGSRHPQNSSHLISYSQSQSLSSSQSGTVASLS
VNNLIRPSSNQQPYPGSPSLAGQQGSVPSPVGTSAHISQPSNNALSPCPGAAQLNEYAPI
KTALMRAQAGVGVGERQVKIISKRQAQEEVMLNTGKRPKPCPPSATTVSHMDVKAPDHTQ
MMVGQLPSASSAIMTRINSEGGGPLFSTNSFMSPVVRPTDGHCPPQGPPEQNQPGVLHLP
QGHPQHAATQPGQHLGGNLYMKQQQQEQQRHHLYHLQHHLTQPDPAQRHSLHQRALQQQQ
QQQQQQQQQQQEQQQHVQKKRGLVRSSQTGSPAGLQKQHHLEKSGVQQQHSHPQQQTQHQ
QHTQQQQSQQHPQQSHQQSQHQQPTQHQQSQHQQHQQQTHQQQPQTQHQQHQQQQQQLQQ
QQQQQSSHSRHQQHLQQQIQQQQQHFRHQEKSCEAQAAGPRSHHSSHLAQQEHLKSGQDH
NAMQRMMSSRTLEQQLISPSINPVSRSSDLACAPSRQERHRVSNYSAEALIGKSSTSGEQ
QRMGLHLQPGRGATQEQPDLRGYLDTSRGKANIAHNPQNRLPSDHPGSADVQRVSECPPF
KAMGGGAGAHQLSGFEAQVSRGSDMTPKSVPPSQRGPQGQQQGGFRMGVGPPADGRNRGG
YTGVHLGSQGVQVGPVLPREQDSCHQSFMQSLLSPHLPEQSNHQRAVQCCPTVSMEYSCV
PGSSAADIQAKASSPSVPQTQKAPTMRLGEGNKGHISQVNSNMHGVRAGLPHPPTPHSSS
EPGRSSAPSRPPTAVSQHSRHIARDTQAAKLRPGDRPRSGTLRSSNPFEPDGHLPLPSGG
GVLLSRPQSGGEARRSTIVRFMADSAQVPSDNNLVPDQHLTQNFGFPFIPEGGMNPPPPI
NANSTFIPPVSQPNASRTPSLLPVEPQNTLPSFYPSYSPAAHPSLPSDVTLQYFPNQMFP
SPSADKGSAPPLNNRFGSILSPPRPVGFGQAGFPLLPDMPPMPIANSSGITPHISNFSLT
SLFPEIATGMPTDGSAMPMSPLLSLSNTSAADSGKQPNRPAHNISHILGHDGSSAV
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atgccagagatgactgaaactcagacacctggtcgtaagccaaaaaagaagaaaaacaaa
gaatcccacaatgcagttgagagacacagaaaagagaagataaatgctgggattaaccgc
atcggtaatcttctgccctgttcccagtcacttaaacagagtaagaacatgatcttggac
caggcttttcgctacatcactgaactgaagaaacaaaatgacacaatgcttctggaagga
ggggataaagtccaagctgaggagatccgtcgaatgcggcgtcagttggaggagatgagg
aaagagagtgctcactatatcgagctcctgaaagcccacgacattaacctgctggaagac
cccacgatacactggaagggcaaacagcgctgtgccaaggtggcaaaagtgactcccact
catcaactcccaaagggaatcatcgtctactccaatggcaacgtgatgtgtcctgcagga
aaggagacaagcccgcgaaaacagccttctgaaacattaattcttcagccaccttctgat
gtcagtgctgggttaagagttaatggggccttgctgcaagtcaatacctctacttccact
cctgctcttcttcctggatcaactgtcacacccacccagtctacgccaggcctgagagtg
gtagagcagtgtgtgattgagaaaccagctgcagcccccactctgccaccttctgtgtct
tacatcaccctccagctccctacagtccccaccaccctgccccaacaacctcagcctgca
gtcctagcccagacccttagcatagcagctacttcagcctcacagctccccactgaaagc
cctgctccacctgtgtccattcacaccacgctaacacagactgtagccacctctagagca
cccgcctcagaggtctgctcttgggtcacagaggacactgccatcaggaatgtaagttac
actgctatcccgaacaaccaaacacttcttacagctgcagcaacaggcaacacacggact
acttggacaacgctgcagatggcagggaacacagtgcatccagtctgccagagtctcccc
accccagaggttagcaacatcagccaggctgtccagcaggtgactgtgtgtcccatgggc
aacaaaccatctgttcagcccattcaaatacagatgcaacctcatgtttctgtacaacaa
gcacccattacagctcacattcaagcgcaaccttttcagagaccaccgcagctacggcca
gcaatcctgaaccaggcacagcctatcctagccccccaaactcagtgtgctgttcttcca
aagccagctgtggtggctcaccccgccattgtgtcacagccgcagtccgctgttctccag
cccgcgtcactggttcctcatcctccaacagccctcattcctcagcctcagaccctccct
caaacagccctagtgccccagccacaggccaccgtgctgccccttcttcagaccatgcag
gtgctgcaggtcaacccaactggaggatcagcctcaggggtaacagcaccacagaacact
aacaacaacaacccaagtgtggtattcctgcagcaggccaatgcctgcccttcacagtca
gttataagagaggaagtaaccaatcagacaccctgtcagcatattgtaatcatccaggca
cccaatcaggctgcacctgcccctcaaaatcctcaggttggcatggtgcctgctgctttg
cccgctgcagtacctgctttgcccactcaaatacccacaaccagcagttcaacgtctccc
acttctttacagagtgtagggggaaagcagctggtgcatattctcccacgccctgttcag
cctcaaatgaaccatcctctgcaggtcacacaggcatccacttccccaacggttcctcca
accccacagactatcactgtgaatggccaggtgtttgccctgcagcccatgaagacctct
gaaaaagccagctcccagggtggccagagtacactacagctggttcagcctatcaccact
gaggaaccaactaccaatgtggccctcaacagtttaggggctctcagcagtctcaaccag
agtatctctcagggccttccacttaccatttctagccagaacaattgtcagcctccagct
gctccatcatcacttgtccagcagaagcagcaacaacctcctgctccagcacccctccct
gtaaccacacttgctctacctgtgcggcaattgcaggtcccttcattgagcccagtcaaa
tcagggccggtggttaacgcctctaagccttcagcaaagaggcgtcgcacggctgtcaat
acaaagaggttaacagctaaaaggaacaaaccagccaagaagaaagagctcagtcaggtg
cagcctgctgttactgtttcagccaagcctgcggctgctgcagaagaggatcagacagtt
atagtgtcccagtgctcaactgtaaaagtcacagacattccccccacttgtaccacagct
gtcgcaacgacagattgcagtaaagctattggaaatgtcacttctacacaaacaacactg
aaaatgattgtgtgtagtccatctagcgggccatctgtacttagccaatcccacacacag
ggcaaaagctctgtcagtgcaactcagagtgatgttttattcagtcacacaaacactagt
ggtatggccgctgcagttacaactgttagtgccacatcagtcaaaccatcagtaagtacg
actgtggccattgagagtaaatctgctgtagtttctgaggtgaaacagctaagcaccagt
acaccaactagcacaacacaaagtaagtcagctgctccttctgctgtttctagacagagc
agatctgtggtcagttctgcaggtgccactgcggctcagtacacttccaccactgtttct
tctgcatgtctgactccagtttgcccctcagccactgcatcagtatctttaaaccaggct
acccaaccaacttctgtatgtcattctcagagatctagtacccaagatcctcttacctgc
aataaacctgagtctcagcccaccacttcaccctctgtgtccactaccttgacactctca
tccactgccccaactttttctgcagcccatagctccgttacagcccctacaacaagttca
gagttcaggaaaagggtcacaaccactagagcaccaacacagcagactgttgttaacatg
cccattctccccccgtgccatcctgccgaagtcaaaccaccccagcaccctggaaggaac
agtgaggttgaggatggaagacactctgctgcagcagcagagaaagagggcttggtgaca
gccacatctgacactccttctaggaaggactttgtcccgtctcagcaggtgtacactaac
ctagatgatcaaaccatagatcaccctatgacatctagcagacagacagactctcccatg
tctacaggggctgggggaggcagagggttctctgtggcttcaatgcttcctcagggtcac
agtattagtgcgtcatctagctcctttggaacatttacattcacatctgagcaggcagag
atgctggctttggtcatgctggaacaggacagtcctgggaggaggacaggaggatgctct
ggggaaaacactgcttcaacaaaccccaccactgccacatgggagcccccaaagacttca
atagtgtcaagcagtaaagaaagaggctcaattggacaacagcaagctaaagtgactaaa
cccatggacacagtaactgttaaacctgcagtccaggtatctgtcagaggacaggttggg
gaggggtctgtcagtgggcccagtggaagcagacatccacaaaactcatctcatctcatc
tcatactcccagtcccagtccctcagctcctcccagagtggcactgtggctagcctcagt
gtaaacaaccttatcaggcccagctccaatcagcagccctatcctggctctcccagtctg
gctggccaacagggctcagttccttcacctgtggggacctcagcccacatatcccaaccg
tcaaataatgcactttcaccctgcccaggtgcagcccagctgaacgagtacgcccctata
aaaactgcattaatgagggctcaggctggagttggtgtgggtgaacgacaagtgaagatc
atctccaagcggcaggcccaggaggaggtgatgctaaacactggaaaacgacccaagcct
tgccctccatcagcaaccactgttagccatatggacgtgaaagccccagaccacacccag
atgatggtgggacagctgccctccgcctcttcagccataatgacgagaattaattctgag
ggtggtggtcctctcttctccacaaactctttcatgagtcctgtagttcggcccacagat
ggccactgtcctcctcaaggaccccctgaacagaaccagccaggggtgcttcatctgccc
cagggtcatccacagcatgctgcaacccagcctggccagcacctgggtgggaacctttac
atgaaacagcagcagcaagaacaacagagacaccatctgtatcatttgcaacaccacctt
acacagcctgaccctgcacagcggcactcgctacaccagagggcgcttcagcagcagcaa
caacaacagcagcagcaacagcaacagcagcaggagcagcagcagcatgtgcagaagaag
cggggactcgtcagaagcagtcagaccggttcacctgccggcttgcagaagcagcatcac
ctggaaaagtctggagttcagcagcagcactcgcatccacaacagcagactcaacatcaa
cagcacacacagcagcagcaatcacagcagcatccacaacagtcccaccaacaatcacaa
catcagcaaccaacccaacaccaacagtctcagcaccaacagcaccaacaacagacacat
caacagcagccccagacacagcatcaacaacaccaacagcagcagcagcagttacagcag
cagcagcagcagcagagctcccactccagacaccagcagcatcttcagcagcagatccag
cagcaacaacagcactttaggcaccaggagaaaagctgtgaagcccaggcagcaggaccc
agatcccaccacagcagccacctggctcagcaggagcacctcaagtctggtcaggaccat
aatgctatgcagaggatgatgagctctcggactctggagcagcagctcatctctccttcc
attaatcctgtgtcccggtcgtctgacctggcctgtgcgccatcacggcaggaacgccac
cgtgtttccaactactctgcggaggcactcatcggtaaaagctccactagtggtgagcag
cagcgtatgggtcttcaccttcagcccggccgcggtgccacacaggagcaaccagacctc
cggggttacctggacacatcacgtggaaaggccaacattgcacataatccacagaaccgc
ctgccctcagaccatccagggtctgccgatgttcaacgggtgtctgagtgcccgcccttc
aaggccatgggtggaggagcaggagcacatcaactcagtggatttgaggcacaagtgtct
cgtggaagtgacatgacccctaagtcggtgcctccttcccagaggggaccgcaggggcag
cagcagggcgggttcaggatgggtgttggccctccagcagatggcaggaaccgtggcggt
tacactggagttcatctcggctcgcagggagtacaggttggcccagtgctgccccgggag
caggacagttgtcatcagagtttcatgcaaagcctcctttccccacacttacctgagcag
agcaaccatcagcgagcagtgcagtgctgtcccacagtcagcatggagtacagctgtgtg
cccggaagctctgcagcagacatacaagccaaggcctccagccccagtgttccccagacc
cagaaggccccaactatgaggcttggagagggcaataaggggcacatttctcaggtcaac
agtaacatgcatggtgtgcgagcaggtctcccccatcctccaaccccacacagcagttct
gagccaggtcgctcgtctgccccttccagaccgcccactgctgttagtcagcactctcgc
cacatcgcccgtgatacacaggctgccaagctgagaccgggcgaccggcctcgatcaggt
actctgagatcaagtaacccctttgagcctgacggtcacctgcctctgccctctggagga
ggggtgctgctgagcaggccgcagtctggaggggaggcaaggcgcagcactatcgttcgc
tttatggcagatagtgctcaggttcctagcgacaacaacctggttcccgatcaacaccta
acacagaactttggtttcccctttattcctgaaggagggatgaatcctccacctcccatc
aatgctaactccacattcatccctccagtaagccagcccaacgcctctcgtacgccgtcc
cttctgcctgtggagccacagaacactttaccctccttctatccttcctattctccagct
gctcaccctagcctcccgagcgatgtcaccctccagtactttcctaaccaaatgttcccc
agcccaagtgcggacaagggcagcgctcctccactcaacaaccgcttcggctctatcctt
tccccgcctcgccctgtgggttttggacaggcaggcttccccctgctcccagatatgccc
cctatgcctatcgccaactcgtctggaatcacccctcacatatccaacttcagcctcacc
tctctgtttcctgagatcgccacaggcatgcccactgatggttcggccatgcctatgtct
cccctgttgtcgctctctaacacctcggctgccgactctggcaagcagcccaaccgtcct
gcccacaacatcagccacatcctgggccatgacggtagctcggctgtgtga
DBGET
integrated database retrieval system
