Scomber scombrus (Atlantic mackerel): 134002642
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Entry
134002642 CDS
T10651
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
134002642 (trpa1b)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
134002642 (trpa1b)
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
CBM_4_9_1
DBB
Motif
Other DBs
NCBI-GeneID:
134002642
NCBI-ProteinID:
XP_062297967
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Position
20:12944273..12960907
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AA seq
1120 aa
AA seq
DB search
MNFSREVTRQTSCYTYVIEDEDPALASLNVFELSEKGDLALLENLVKKSPEVLNERDECG
ASPLHHAAAGGHVILIQSITAVIDSKELNSCDEQGNVPLHWAVEKNNAESCRALLDLGAD
PNILNMALLSPLHLAVSHGHNNLVELLLSYSATDCNLPGDLGNTPVMLACSINNCEALST
LITHGARLCQQNKLGHYAMHAAAFAGAKPAMEVILKAGEELGHSSEAHINYLDKSMSSPL
HLAVRGGNIETIRLCLATGAKVDQQQNDRSTPLHLACTQGATEVVKLMLSSYEQVEDIIN
LTDGAYQTPLHRATIFDHMELAEYLISLGADLNSIDCEGNSPLLLATSCGAWKTVALLLS
KGANVNVKDGFGCNFLHLAIQQPKGLKNLPEDALQHSCVKPLLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQLGLECKSKDKKSALHFAAQYGRINTCHRILETITDSRLLNEGDER
GLTPLHLASRGGHTKVVQLLLRKGALFHSDYKGWTCLHHAASEGYTQTMDILLSANLKLL
NKTDEDGNTALHIAARSGHMAAVKLMLARGAELILNKNDTSFLHEALQNGRKDVVNAVID
SDRCKEAVKLFKPGSSQRCPILDMIEVLPETYKHLLDRCVRESDDDHNSPDYHIEYNFKW
LQAPLVLQKVKDKTLRPQPLAALNAMVQYNRIELLNHPVCKKYLAMKWIAYGSTAHVLNM
FFYLLGLLPLTHLIVTLRPTMNTTETGEHSIQMVPTYFLKQSLFLSWCMVMVLIINIYSI
AKEVVQISQQRWSYFRDYSNQCDWLSAIFSLLFIIPLMLNAEGSLHWQAGAAAVLNSWVG
FLLYLQRFEGIGIYVVMFGEIMKTLVRIVMLFLYLMLAFSLAFHALMLNQKEFGSVPLAV
MQTFVMMVGELNYQNNFLDAYLKHELPFGLLSYFIFVIFVLLMPILLINLMIGLAVGDIA
EVQRNAALKRIAMQIDLHTALEDKLPYWFMKRVDKPFITIYPNRKCSRHFINQLFLGEED
KNEVWSHVKAKSQSCTVIENELRKQKSRMKEMSCLLEKQSNLLKLIIQKMEITSEADEYD
GPVNIRRNMWPNLSQAKPRGHTMSRWVPLMKAIDSKKNGR
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggaagtgacccgacagaccagttgttatacatatgtgatagaagat
gaggatccagccctggcaagtctaaatgtatttgagttgtcggagaagggtgacctggct
ttgctggagaacctggtgaagaagagcccagaggtcctgaatgaaagagatgaatgtgga
gccagtccccttcatcatgctgccgcagggggccacgtcatcctcatccaatctatcact
gctgtcatagactcaaaggagctgaacagctgtgatgagcagggcaatgtgcccctacac
tgggcagtggaaaaaaacaatgctgagagctgtagggcacttttggacctgggtgctgac
cccaacatcctcaacatggccctcctgtccccactgcatctggctgttagccatggacac
aacaacctggtggagctcctactgtcctacagtgctacagactgcaacctgccaggagac
cttgggaacaccccagtgatgctggcctgctccatcaataactgtgaggctctcagcaca
ctgataacgcatggagcacgcctttgccaacagaacaagctcggccattacgccatgcac
gcagctgcttttgcaggtgcaaaaccagccatggaagtgatcctgaaggccggagaagag
cttggtcactcaagtgaagcccacatcaattatcttgacaagtccatgagcagtcccctc
catctggctgtacgtggtgggaacatcgagaccatccgcctctgcctagccactggggca
aaagttgaccaacaacagaatgacagatccacgccgcttcatttggcttgcacccagggc
gctacagaggtagtcaaactgatgctctcatcctatgagcaagtggaagacatcatcaac
ctgactgatggggcgtatcagacccctttacacagggctacaatatttgaccacatggag
ctggcagagtatctaatttctttgggtgcagacctaaacagcattgattgtgaggggaac
tctcccttgctgctggctacgagctgtggagcttggaaaacagtggcactgcttctgtca
aaaggggcgaatgtaaatgtcaaagacggatttggttgtaacttccttcacctggccata
caacagccaaagggtctgaaaaatctcccagaagatgcactccagcatagttgtgtgaag
ccgttgctgagctgtgaggataatgagggctgtaccccactccactatgcttgcagactg
ggtatccatgactcagtgaagaacatgctgggcctctcgggacagctcggcctcgaatgc
aagtccaaggacaagaagtctgccctgcactttgctgctcagtacgggcgcatcaataca
tgtcacagaatattggagaccatcacagactctcgtttgctaaatgaaggggatgagcgg
ggtctgacaccacttcatttagcttcgagaggggggcacaccaaggtggtacagttgctt
ctccgtaaaggagctctctttcatagtgattacaaaggctggacgtgtctgcaccatgct
gcatctgagggatacacacaaactatggacattctcctgtcagccaatctaaagttgctg
aataaaactgatgaggatgggaacactgcactccacattgcagcaagatcggggcatatg
gctgcagtcaagctcatgctggctcgtggggcagagctcatcttaaacaagaacgacaca
tcattcctccacgaagctctgcaaaatggaagaaaagatgtagtcaatgctgtaattgac
agtgacagatgcaaagaggctgtgaaactgttcaaacctggctctagccaacgatgtcca
atattagacatgattgaggtcctgcccgagacctacaagcacttgttggaccgctgtgtg
agggaatctgacgatgatcataacagtcctgactaccatattgaatacaatttcaaatgg
ctccaagctcccctagtactgcagaaggtgaaggacaagaccttgagacctcagccacta
gctgcactcaatgcaatggtgcagtacaaccgcattgagctcctcaaccacccggtctgc
aaaaagtatctggcaatgaagtggattgcttacgggagcacggctcacgtgctcaacatg
tttttttacctgttaggcctgctgcccctaactcacctgatagtgactctgaggcccacc
atgaacaccactgagacaggggagcacagcatccagatggtgcccacatatttcctaaag
caaagtctgtttttgtcctggtgtatggtaatggtcttgatcataaacatctactcgata
gcaaaggaagtggtgcagatatcacaacagcgttggagttacttcagggattattccaac
cagtgtgactggttgtcagccatcttctctcttctgttcatcattcctctcatgctcaat
gcagagggttcattacactggcaagcaggggcagcggcagttttaaactcctgggtggga
tttctcctttatctccagaggtttgaggggattggcatctatgttgtgatgtttggggaa
atcatgaagacactggtccgtattgtaatgctgttcctgtacctgatgttagcgttcagt
ttggcgttccatgctctgatgcttaaccagaaagagtttggcagtgtgccacttgcagtg
atgcaaacctttgtgatgatggtgggagaactgaactaccagaataacttcctggatgct
tatctgaaacatgagcttccctttggtctcctgtcatacttcatttttgtgatctttgtt
ctgctcatgccaatactgctgattaacctgatgattgggttagcagttggagatattgct
gaagtacagagaaatgctgccctaaaaagaatagccatgcagattgatctccacaccgcc
ctggaagataagctgccttattggtttatgaaacgagttgacaaacccttcatcaccatt
taccccaatcgcaagtgctccaggcacttcataaaccaactcttcttaggtgaagaggac
aaaaatgaagtctggagtcatgtgaaggccaagtcacagagctgtactgtgatagagaat
gagctcagaaagcagaagtccaggatgaaagagatgtcgtgtttgctggagaagcaaagc
aacctcctgaagctcatcatccagaagatggagatcacctcagaggcagacgagtacgac
ggccctgtgaacatcagacgcaacatgtggccaaacttgagtcaggctaaaccaagagga
cacactatgtcacgctgggttccactgatgaaggccattgattccaaaaaaaatggaaga
taa
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