Scomber scombrus (Atlantic mackerel): 134003039
Help
Entry
134003039 CDS
T10651
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134003039 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssco03400
]
134003039 (msh2)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134003039 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
134003039
NCBI-ProteinID:
XP_062298127
LinkDB
All DBs
Position
21:complement(17753404..17764615)
Genome browser
AA seq
934 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHSFLNFFFSMPEKPESTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKNLGSGSRKLESVVLSKLNFEAFVRDLLLVKQYRVEVYKNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGGGGSGAEGCAGVVGVRFATGADGQRVVGVGYVDAAQRKMGVCEFPD
NEIFSNLESLLVQISPKECLLAQGDGNTDSSKLREVVERSGMLVSDRKRAEFNSKDIVQD
LNRLLRAKKGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTSLDLGQYM
RLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERL
DLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVSQIPGLVTA
LERYSGSYQVLLEAVFLSPLRDMQNDFTKYQEMIETTLDMNQIDHHEFLVKASFDPALSE
LREKMDVLEKSMQSVLSSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEDYTKNREEYEDAQNAIVKEIINISSGYVDPLQTLSDIIA
QLDAVVSFALASVSAPVPYVRPLLLADGCRRMELLQARHPCMETDADTAFIPNDITFIQG
EKSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVK
GVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGSFCLF
ATHFHELTALAAQQPTVQNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPSV
VAMAKEKAEELEEFQEPAGERSEQEEEPEAKRRRTDKQVGEDLIQDFLEKVKSLPATTMT
EEEVKVELRRMKEELMAKKNTFISEILKRCVKTA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacaaaacctgtcaatggacagtgcagccgagcatagctttcta
aactttttcttctccatgccggagaaaccggagtccactttcagaatatttgaccgtaac
gactactacactgttcacgggaaagacgccatattcgcggccaaggaggttttcaagact
aatggcgtcatcaaaaatttgggctcagggagtcgcaagctggagagtgtggtcctcagt
aagctcaactttgaggcctttgtgagagacttgctgctggtgaagcagtacagagtagaa
gtgtacaaaaaccacagcaagagcagcaaggagcacgactggaagattgagtacaaggcc
tctccaggaaacttgacccagtttgaggaaattctgttcggtggtggtggaagcggagcg
gagggctgcgcaggagtcgtaggcgtgcgttttgctacaggagctgatgggcagcgtgtg
gtcggggtcggctatgtggacgcagctcagaggaaaatgggagtgtgtgagtttccggac
aacgagatcttctccaacctggagtccctgcttgtccaaatcagccccaaagagtgtctc
ttagcccagggtgacggcaacactgatagcagtaaactacgtgaggtggtagagcgaagc
gggatgctggtctctgacaggaagagagcagagttcaacagcaaggacatagtgcaggat
ctcaacaggctgctaagagccaaaaaaggagagactgtggccagcaacacactgcctgaa
ctggacaaacaggtggctatgtcgtgcttggctgcagtcgtgcgattcctcgaacttctc
tctgacgagtccaacttcaactccttcagtctgaccagtctggacctgggtcagtacatg
agactggacaacgctgctgtcagggctctcaacctcttccagggttcaccagatgacacc
agcggggctcattcattggccggtctgttgaacaagtgccgcacacctcagggtcagcgg
ctcgtcaaccagtggatcaaacaaccactcatggacaaaaccaaaatagaggagagactg
gacctggtggagagtttcgtgtgtgactctgagctgaggcagacctgccaggaggacttg
ctgcggcgatttcctgatcttcaccgtctggccaagaagtttcaccgacactctgctacc
ctgcaggactgttaccgcgtctaccaggctgtgagccaaatccctggcctcgtcacagcc
ctggagagatactcgggcagctaccaggtactgttggaggcagtgttcctctcgcctctc
agagacatgcaaaatgacttcactaagtatcaggagatgatcgagacgacgctggacatg
aaccagattgaccaccatgagttcctggtgaaggcgtcgtttgatccggcgttgagtgag
ctgagagaaaagatggacgtcctggagaagagcatgcagtctgtgctgagcagcgcagcg
agagagctaggtctggatgctggtaagactgtgaagctggagtccaacgccatgctgggc
ttttacctgagagtcacctgcaaggaggagaaatccctgagaaacaacaagaagttcacc
actctggacgttcagaagaacggagtgcgcttcaccaacagtaagctcagttccctgaac
gaggattacaccaagaacagggaggaatacgaggatgcccagaacgctattgtcaaagag
atcatcaacatttcctcaggctatgtggacccactccagacgctgagtgatatcatagcg
cagctggatgccgtggtgagcttcgccttggcgtccgtctctgctcccgtgccctacgtt
cggcctcttctgctggccgacggctgcaggcgtatggagctgctgcaggccagacatccc
tgcatggagacagacgcagacaccgccttcatacccaacgatatcaccttcatacaagga
gagaagagtttttatattattacaggaccaaatatgggcggcaagtcgacgtttatccgt
caggtgggcgtgatcgctctgatggctcaaatcggctgctttgtgccctgtgagaaggcg
gagcttagcgtgattgacagcgtcctggccagggtgggagcaggagacagccaggtgaaa
ggagtgtccaccttcatgtccgagatgctggagacggctgccattctgcgctcggccacg
gagaactcgctcatcataatcgacgagctgggcagaggcacgtccacctacgatggcttc
ggtctggcttgggccatcagcgaacacatcgcctccaagattggcagcttctgcctgttt
gccactcacttccatgagctgacggcactcgccgcacagcagcccacagtccaaaacctg
cacgtcacggccctgacctcccacaacacactcaccatgctgtacagagtcaaaccaggt
gtatgtgatcagagttttggaatccacgttgccgagctggcttgcttcccgccatcggtg
gttgccatggccaaggagaaggccgaggagttggaggagttccaggagcccgcaggggag
aggtcggagcaggaggaagagcccgaggccaagagacgacgaacagataaacaagttggg
gaagacctgatccaagacttcctggagaaggtgaaatcacttcctgccaccactatgact
gaagaggaggtgaaggttgagctcaggaggatgaaggaggagctgatggccaagaagaac
acgttcatctcagagatcctcaaacgctgcgtaaaaacggcctga
DBGET
integrated database retrieval system
