Scomber scombrus (Atlantic mackerel): 134003073
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Entry
134003073 CDS
T10651
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134003073 (rnf40)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134003073 (rnf40)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
134003073 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
ADIP
zf-RING_UBOX
zf-RING_2
zf-RING_5
OVT1
zf-rbx1
SpoIIE
Motif
Other DBs
NCBI-GeneID:
134003073
NCBI-ProteinID:
XP_062298176
LinkDB
All DBs
Position
21:complement(10674183..10689825)
Genome browser
AA seq
1005 aa
AA seq
DB search
MSGAGGGKRPSGGDSPPGPPEKKSKKEEKTTTTLIEPIRIAGVSSTEEMDMKVLQFKNKK
LCERLEQRQTMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEEDVHVLRKRIEPETPV
ASTPVPPPAPLPDPTPMEEDGVSLASPASAVPPPPLPETQNEGEQPEQQQQQEERQEEGQ
EQQQQPPPPDGSEELLTPTEPPQNSTTDASPPPPPLSENAKGFLDTLEHSSEEELSLHLQ
DRMQFSKEAIACLVCVYDRLHSRINDMCKQVQAAASDDESQSEIINVNHTLLDENSRLRD
LATLLQGRHHKMSMEYNELVDKVTSSETKVSEMETTVEDLQWDIEKLRNREQKLNKHLAE
AMEQLKSGYSSTGSSGGLPGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQVELQE
AVRESEKLKMDLRNIPEEVVKETLEYKCLQSQFSLLYNESLGVKTQLDEARALLLTAKNA
HLRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINRE
MRHLISSLQNHNLQLKGDVQRYKRKLRETQMEINKLRCQSGDTGVLILEETTSDSIDVKK
EEDEDQEEEEERRKELERQRAREREREREAERERERERERERQRSDELKRKDSDTLKMLR
VELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVDELRMRVRELEERERK
ESKKLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRLL
QQLREKDDANFKLMSERIKSNQIYKLLKEEKEELADQVLTFKTQVDAQLLVVQKLEEKEG
VLQSTLAALEKELAVRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLKEIQVSVAENRT
ARERESSNLKRAQEDLSRLRRKLEKQKKVEVYSDADEILQEEINQYKAKLRCPCCNTRDK
ETVLTKCFHVFCYECLKMRYDTRQRKCPKCNCAFGANDFHRIYIT
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgctgggggaggaaaacgtccctcaggaggggacagcccccctggcccccct
gagaagaagagcaaaaaagaagagaagaccaccaccactctcattgagcccatacgcatc
gctggagtgtcttctactgaggaaatggacatgaaggtgctccagttcaagaataagaag
ctgtgtgagcgcttggagcagagacagacgatggaggatgagttgcgagagaaaattgaa
aagctggagaagaggcaggccactgatgacaccaccctactgattgtcaaccgctactgg
tcgcagttggaagaggacgtgcacgttctacgaaaacgtattgagcccgagactccggtg
gcatccacccctgtcccaccccctgctcctctccctgaccctacaccaatggaggaagat
ggtgtcagtctggcctcaccagcctctgccgtgcctccacctccactcccagagacacag
aatgagggggagcagccagagcagcagcagcagcaggaggagcgtcaggaagagggtcag
gagcagcagcagcagcctcctcctcctgatgggtcagaagagttgttgacgcccacagag
ccgccacagaactccacaacagatgcatcgccaccccctcctcccttaagtgagaatgcc
aagggtttcctggacacgctggagcacagcagcgaggaggagctcagcctgcacctccag
gaccgcatgcagttcagcaaggaagccattgcctgcctggtgtgcgtctacgacaggctg
cacagccgcatcaacgacatgtgcaagcaggtccaagcagcagcaagtgacgacgagagc
cagtctgagatcatcaatgtgaaccacactctgctggatgagaacagtcgattgagagac
ctggccactctcctgcagggccgacaccacaagatgtccatggagtacaatgagttggtg
gacaaggtgacaagctctgagactaaggtatccgagatggagacgacggtggaggacctg
cagtgggacattgaaaaacttcgcaacagggaacaaaagctcaacaaacacctagcagag
gccatggagcagcttaagtctggatacagcagcactggcagctcaggtgggcttcctgga
ggccagattacattgaacattcaaaagtttgagagtcttaatgcagagttggagcacaac
caggagttggctaatagccgcatggccgagttggagaaactgcaggtggagctccaggag
gctgtgagggagagcgagaagctcaagatggacttgcggaatattccagaggaggttgtg
aaagagaccctggagtacaaatgtctacagtcccagttctccctgctgtacaatgagtct
ctcggggtgaaaacccagctggatgaggcacgagctctcctgctcactgccaagaacgcc
catctccgacagattgagcacatggagagtgatgagctgtcccttcagaagaagctgcgg
actgaggtcatccagctggaggacaccctggcccaggtgcgcaaagagtatgagatgctg
cgcattgagtttgagcaaaacctggcagccaacgagcaagcaggaccaatcaacagggaa
atgcgacatttaatcagcagccttcagaaccacaacttacagttgaaaggtgatgtgcag
cgctataaaaggaagttgcgggaaacacagatggagatcaataagttacgctgtcagagc
ggtgacacaggtgttctgatattagaggagacaacgagcgacagcattgacgtgaagaag
gaggaggatgaggaccaggaggaggaagaggagaggaggaaggaactggagagacagcgg
gcccgggagagagagagggagagggaggccgagcgagaacgagagcgggagcgggagaga
gagaggcagcgcagtgatgagctgaagaggaaggactcggatacactgaagatgctcaga
gtagaactcaagaaagcccaggagtcccagaaagagatgaagctcctattggacatgtac
aagtccgctccaaaggagcagagggacaaagtgcaactcatggcagctgaacgcaaatct
aaagctgaggtggatgagttgcggatgcgagtgcgagagctggaggagagggagaggaag
gaaagcaagaagctggccgatgaagatgccctcaggaagatccgagtggcagaagagacc
atcgagcatctacagaagaaactcgctgccactaaacaggaggaggaagccctgctgagc
gagatggatgtgacaggccaggcttttgaggacatgcaagaacagaacagccgactgctg
cagcagttacgagagaaggacgatgccaatttcaagctgatgagtgagagaattaaatcg
aaccagatctacaagctgctgaaagaggagaaggaggagttggcagaccaagttctcaca
ttcaaaacccaggtggatgcccagctgctggtcgtgcagaagctagaagaaaaagagggt
gttctccagagcacgctggccgcacttgaaaaagagctggccgtccggacacaagcacta
gaactcaacaagaggaaggcggtggaggctgcccagctggcagaggacctgaaggtgcag
ctagagcacacgcaggccaagcttaaggagatccaggtctctgttgctgagaaccgcacc
gcccgggaaagagaaagcagcaatcttaaaagagcacaggaggatctgtccaggctgagg
cggaagctggagaaacagaagaaggtggaggtttactctgacgctgatgagatcctgcag
gaggaaattaaccagtacaaggccaagctgcgctgcccctgctgcaacacacgagacaag
gagaccgtgctcaccaagtgtttccacgttttttgctacgaatgtctgaagatgcgttac
gacacccgacagaggaagtgccccaagtgcaactgtgccttcggagccaacgactttcac
cgcatctacattacctag
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integrated database retrieval system
