Scomber scombrus (Atlantic mackerel): 134003175
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Entry
134003175 CDS
T10651
Name
(RefSeq) scavenger receptor cysteine-rich type 1 protein M130-like
KO
K06545
CD163 antigen
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
CD molecules [BR:
ssco04090
]
Proteins
134003175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134003175
NCBI-ProteinID:
XP_062298287
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Position
21:complement(25002632..25032140)
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AA seq
1865 aa
AA seq
DB search
MDCVSSDSSNHIRELTCSDSVRLVNGTSLCSGRLEVKSEQSWSSVCEADFDQQDADVVCR
ELDCGTSLVLQGALYGEVEAPMWTKEFQCGGNESALLDCERSNSATRTCSPGKAVGLTCS
EPFRLVGGASRCAGTLEVKEGVWRPLRYSDWTLNEADAICRNLDCGSAVSTRSRRLDSDR
PVWVISSDCLRSGSARRSCVSSSYLSSSILEITCSDSVRLVNGSRLCSGRLEVKSEQSWS
SVCEADFDQQDAEVVCRELGCGTPSVLQGALYGEVEAPMWTKEFQCGGHESALLDCRRSD
SARRTCSPGKAVGLTCSDLHPVRLVGGASRCAGTLELKHGEWRPVSYSDWTLKKADVLCR
YLDCGSAVSIGSRNEASHRSVWWIRSDCFLSESSLMDCVSSRSSSSIVELTCSDSVRLVN
GTSLCSGRLEVKSEQSWSSVCEPDFDQQDAEVVCRELGCGTPLVLQGALYGEVEAPMWTK
EFQCGGNESALLDCRRSDSARRTCSPGKAVGLTCSPEPVRLVGGASRCAGTLEMKHGEWR
PVSYSVWTLKEAAIICRHLDCGSALSISSRNEYSYRSLWSISSDCVQSGSALRDCASSYS
SYFIMEITCSDSVRLVNGTSLCSGRLEVKSEQSWSSVCEADFDQQDAEVVCRQIDCGAPS
VLQGALYGEVEAPMWTKEFQCGGNESALLDCRRSDSARRTCSPGKAVGLTCSEPVRLVGG
ASRCAGTLEVKYGEWRPVWYYDWIPKDADVICRYLDCGSAVSTRSRDEASSRSTWWFRSD
WLHSASDVRDCVFSYSSSSILELTCSDSVRLVNGTSLCSGRLEVKSEQTWSSVCEADFDQ
QDAEVVCRDLGCGAPSVLQGALYGEVEAPMWTKEFQCGGNESALLDCRRSNSTRRTCSPG
KAVGLTCSDPVRLVGGASRCAGTLELKYGEWRPVGGKFYDWTLKKADAICRSLDCGSAVS
TGIRNVHSYRMSVWWISSECLQPGSALMDCASSSGSSSSILEITCSDSVRLVNGTSLCSG
RLEVKSEQSWSSVCEADFDQQDAEVVCRELDCGTPLVLQGALYGEVEAPMWTKEFQCGGN
ESALLDCRRSDSARRTCSPGKAVGLTCSEPYRLVGGASRCAGTLELKQGEWRPVSYPDWT
LKETDVICRYLDCGSAISQSRIEVGSDPPFSISVWRIRSDCVKSGSALRDCVSSYSSYFI
MEITCSVLCNSHPTFHVSRVKPIKESLMVPAALPPPPPWMVDGGPVYSVKALLDVRNRGQ
GRQFLVDWEGYGPEERQWVPASFIVDPDLIMDFYNSHPQLFETVKLVGGASRCAGTLEMK
QGEWRQVTYSGWTLKEAAVMCRYLDCGSAVSTRSRYEASRRSVWRIRSGCLESGSDLKYC
VLSDSSSYTVEVTCSGNDLQEYTETEMGFISKCVDEVTTVKTRATNKPWLTDEVRSLLKT
RDSAFKAGDAAAYMEARNNLKRGIREAKKQYGRNLEKNYTMDTRRLWQGFQTDTNTRSAQ
RLTPASTDQVLQLSTESVRRTFSRINPRKASGPDNVPGRVLKSCSAELKDVFTDIFNTSL
CQAVVPTCFKSATIVLVPKNSNPHCLNDYRPVALTPVAMKCFERLVKDHIKSHFPASMDH
LQFAYRTNRSTEDAISILLHLTLTHLEDKNTYARILLVDFSSEFNTILPQQLVEKLQLLG
VGTNTCNWVKINSRTSNTITVSTGSPQGCVLSPLLFTMLTHDCSANHNTNHIIKLADDTT
VVRLITYGDESAYRDEVETLMTCGTVVERVQSTKFLGIHLREDLTSRDNTTAVARKAQQR
LHLLQRLKRTGLSKSALTVFYRGTIKSILTYCITSWSAGVRRQDRRRTLRWIIIIPVRPA
EEERA
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atggactgtgtatcatcagattcttctaatcatatccgggagctcacctgctcagactct
gtcaggctggtgaatgggactagtctgtgttcaggcagactggaggtgaagtctgagcag
tcgtggtcctcagtgtgtgaagctgactttgaccagcaggatgcagatgtggtctgtagg
gagcttgactgtgggacttctttagtcctccagggggcactctatggagaagtggaggct
ccaatgtggaccaaagagttccagtgtggaggcaatgagtctgctctcctggactgtgaa
cgatcaaactcagctacaagaacctgctcacctggtaaagctgttggactcacctgctca
gagcctttcagattggtgggaggagccagtcgctgtgcaggtacactggaggtgaaagag
ggagtgtggagaccattaagatactctgactggaccctgaatgaagcagatgcaatatgt
agaaatctggactgtggctctgctgtttcaacaagaagcagaaggctagactcagacaga
cctgtatgggtgatcagttctgactgtcttcgttctggatctgcacggaggagctgtgta
tcatcatcatatttatcgtcctccatcttggagatcacctgctcagactctgtcaggctg
gtgaatgggtctagactgtgttcaggcagactggaggtgaagtctgagcagtcgtggtcc
tcagtgtgtgaagctgactttgaccagcaggatgcagaggtggtctgtagggagcttggc
tgtgggactccttcagtcctccagggggcgctctatggagaagtggaggctccaatgtgg
accaaagagttccagtgtggaggccatgagtctgctctcctggactgtagaagatcagac
tcagctagaagaacctgctcacctggtaaagctgttggactcacctgctcagacctgcat
cctgtcaggttggtgggaggagccagtcgctgtgcaggtacactggagctgaaacatgga
gagtggagaccagtgagttactctgactggaccctgaagaaagcagacgtactatgtaga
tatttggactgtggctctgctgtttcaataggaagcagaaatgaagcctcacacagatct
gtatggtggatcagatctgactgttttctgtctgaatcttccctgatggactgtgtatca
tcacgttcatcttcctccatagtggagctcacctgctcagactctgtcaggctggtgaat
gggactagtctgtgttcaggcagactggaggtgaagtctgagcagtcgtggtcctcagtg
tgtgaacctgactttgaccagcaggatgcagaggtggtttgtagggagcttggctgtggg
actcctttagtcctccagggggcgctctatggagaagtggaggctccaatgtggaccaaa
gagttccagtgtggaggcaatgagtctgctctcctggactgtagaagatcagactcagct
agaagaacctgctcacctggtaaagctgttggactcacctgctcaccagagcctgtcagg
ttggtgggaggagccagtcgctgtgcaggtacactggagatgaaacatggagagtggaga
ccagtgagttactctgtctggaccctgaaggaagccgctataatatgcagacatctggac
tgtggctctgctctttcaataagcagcagaaatgaatactcatacagatctctatggagc
atcagttctgactgtgttcagtctggatctgcactgagggactgtgcatcatcatattcc
tcttacttcatcatggaaatcacctgctcagactctgtcaggctggtgaatgggactagt
ctgtgttcaggcagactggaggtgaagtctgagcagtcgtggtcctcagtgtgtgaagct
gactttgaccagcaggatgcagaggtggtctgtaggcagattgactgtggggctccttca
gtcctccagggggcgctctatggagaagtggaggctccaatgtggaccaaagagttccag
tgtggaggcaatgagtctgctctcctggactgtagaagatcagactcagctagaagaacc
tgctcacctggtaaagctgttggactcacctgctcagagcctgtcaggttggtgggagga
gccagtcgctgtgcaggtacactggaggtgaaatatggagagtggagaccagtgtggtac
tatgactggatcccgaaggatgcagatgtaatatgtagatatttggactgtggctctgct
gtttcaacaagaagcagagatgaagcctcaagcagatctacatggtggttcagatctgac
tggcttcattctgcttctgatgtgagggactgtgtgttctcatattcctcttcctccatc
ttggagctcacttgctcagactctgtcaggctggtgaatgggactagtctgtgttcaggc
agactggaggtgaagtctgagcagacgtggtcctcagtgtgtgaagctgactttgaccag
caggatgcagaggtggtctgtagggatcttggctgtggggctccttcagtcctccagggg
gcgctctatggagaagtggaggctccaatgtggaccaaagagttccagtgtggaggcaat
gagtctgctctcctggactgtagaagatcaaactcaactagaagaacctgctcacctggt
aaagctgttggactcacctgctcagatcctgtcaggttggtgggaggagccagtcgctgt
gcaggtacactggagctgaaatatggagagtggagaccagtcggtggaaaattctatgac
tggaccctgaagaaagcagatgcaatatgtagatctctggattgtggctctgctgtttct
acaggaatcagaaatgtacactcataccgtatgtctgtatggtggatcagctctgagtgt
cttcaacctggatctgcactgatggactgtgcatcatcatcaggttcttcttcctccatc
ttggagatcacctgttcagactctgtcaggctggtgaatgggactagtctgtgttcaggc
agactggaggtgaagtctgagcagtcgtggtcctcagtgtgtgaagctgactttgaccag
caggatgcagaggtggtctgtagggagcttgactgtgggactcctttagtcctccagggg
gcgctctatggagaagtggaggctccaatgtggaccaaagagttccagtgtggaggcaat
gagtctgctctcctggactgtagaagatcagactcagctagaagaacctgctcacctggt
aaagctgttggactcacctgctcagagccttacaggttggtgggaggagccagtcgctgt
gcaggtacactggagctgaaacagggagagtggagaccagtgagttaccctgactggacc
ctaaaggaaacagatgtaatatgcagatatctggactgtggctctgctatttcacaaagc
agaattgaagtcggatctgatcctccattcagtatttctgtatggaggatcagatctgac
tgtgtaaagtctggatctgcactgagggactgtgtatcatcatattcctcttacttcatc
atggaaatcacctgctcagttctctgtaattctcaccccaccttccacgtcagccgggta
aaacccatcaaggagagtctgatggttcctgcggccttgccccctccgccaccgtggatg
gtcgatggtggtcctgtctactccgtgaaggcccttctggatgtgcgcaacaggggtcag
ggaagacaattcctggtggactgggagggctacggtccggaggaacgacaatgggtccct
gcaagcttcattgtggaccctgacctcatcatggacttttacaattctcaccctcagttg
tttgagactgtcaagttggtgggaggagccagtcgctgtgcaggtacactggagatgaaa
cagggagagtggagacaagtgacttattctggctggaccctgaaggaagcagctgtaatg
tgtagatatttggactgtggctctgctgtttcaaccagaagcagatatgaagcctcacgt
agatctgtatggaggatcagatctggttgtcttgagtctggatctgacctgaagtactgt
gtattatcagattcctcttcctacaccgtggaggtcacctgctcaggtaacgacctgcag
gaatacacagagacagaaatgggattcatctccaaatgtgttgatgaagtgacaactgtt
aaaacacgtgccacaaataagccatggttgacagacgaggttcgttcactcctgaagacc
cgcgattctgcctttaaagctggcgatgctgcagcatatatggaggcaaggaacaatctg
aaaagggggatcagagaggctaaaaaacagtatgggaggaacttggagaagaactatacc
atggacacaaggcgcctgtggcagggatttcagacagacaccaacaccaggagtgcacaa
aggctgacaccagcatctactgaccaggttctacagctgtctactgagagtgttaggagg
accttctccaggataaatcctagaaaggcctccggaccagacaatgtaccaggccgtgtc
ttaaagagctgttcagccgaactaaaggatgtcttcacggacatttttaacacctctctc
tgccaagctgttgtgcccacctgttttaagagcgccaccatagtactagttcctaaaaat
tcaaacccccactgtctaaatgactatcgccctgttgccctcacaccagttgccatgaaa
tgcttcgagcggcttgtcaaggaccacattaaatcccactttcctgccagcatggatcat
ctacagtttgcatacaggacaaaccggtctacggaggatgccatatccatcctgctccac
ctcaccctcactcatctggaagacaagaacacctacgccaggatcctgctagttgatttt
agctcggagtttaataccatcctgccacagcagctggtggagaaactgcagctgctggga
gtgggcactaacacctgcaactgggtcaaaatcaacagcagaacatccaacaccatcaca
gtgagtactggatcaccacagggatgtgttctgagcccactactctttaccatgctgacg
catgactgttctgccaatcataacaccaaccacataattaaattggctgatgacacaacc
gttgtgaggctcatcacatatggagatgaatcagcatacagggatgaggtggagacccta
atgacttgcggcactgttgttgagagagtccagagcaccaaattcctcgggatccatctc
agggaagacttgacctccagagacaataccacagctgtagccaggaaagcacaacagcgt
cttcatctactccagaggctgaagagaacaggcctctccaagtcagccctgactgtgttc
taccgtgggaccatcaagagcatcctcacctactgtatcacttcctggtcagcaggagtt
agacgtcaggaccgcaggagaacactgagatggattattatcatcccagttcgtccagct
gaagaggaaagagcctaa
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