Scomber scombrus (Atlantic mackerel): 134003212
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Entry
134003212 CDS
T10651
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03020
RNA polymerase
ssco04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134003212 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
134003212 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
134003212 (polr3a)
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134003212 (polr3a)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
134003212 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
134003212
NCBI-ProteinID:
XP_062298329
LinkDB
All DBs
Position
21:16098673..16123665
Genome browser
AA seq
1390 aa
AA seq
DB search
MVKEQFRETDVARKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDMNHTPLPYGVLDHRM
GTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSIMLTKE
EKLQFIDMLKRPNLAYLQKRGLKKKISDKCRKRTICLHCSAFNGPVKKCGLLKIIHEKYK
TTKKVVDPFVSEFLQSFDTAVEHNKVVEPLLTRAQENLNPLVALNLFKRIPQEDITLLLM
NPEAGKPADLILTRLLVPPVCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANF
IQNRHTQMKRFLKYGNREKIAQELRFGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTAAYLLTLKDTFFDRSKACQIVASILVDKDEKIRISLPHPSIIKPMALWTGKQI
FSLILKPSKECPVKANLRTKGKQYSGKGEDLCSNDSFVVIHNSELMCGTMDKGTLGSGSK
NNIFYILLRDWGQQEAASAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQDLLDDG
YEKCDEYIEALKTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYACPDEPALSQNELVLTADAIMKRTDFLC
CRDSYLEEIKKFIKSVSERIKKTRDKYGINDNGTSEPKVLYQLDRITPKQLEKFLETCRD
KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI
STPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
RLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQSLKEELPKVV
VQGIPEVSRAVIHIDEQSGKNKYKLLVEGDNLRAVMATHGVNGSRTTSNNTYEVEKTLGI
EAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLAS
FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKAEKDPSPVKRPLLFE
NADFHIPLIT
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagcagttcagagagacagatgtggccaggaaaataagccacatctgcttt
gggatgaaatctgctgagcagatgcgtcagcaggcccacatccaggtggtcagtaagaac
ctgtacagccaggacatgaatcacactccactgccctatggagtgttggaccaccgtatg
ggtaccagtgagaaagacagaccatgtttgacatgtgggaagaatctggctgattgttta
ggacattatggctacctggatctggagctgccgtgttttcatgtcggctatttcaaagcc
atcataggaatcttacagatgatttgcaagacatgttcgagtataatgctgaccaaagag
gagaaactgcagttcatagatatgttgaaacggcccaacctggcctatctccagaagcgt
gggttgaagaagaagatctctgataaatgccgcaaaaggacaatctgtctgcattgttcg
gcttttaatggaccagtgaaaaagtgtggcctgcttaaaattatccatgagaagtataaa
acaaccaagaaggttgtggatccttttgtgtcagaattcctgcagtcctttgatactgcc
gtcgaacacaacaaagtggtggagcctctgctaacacgggcgcaggaaaacctgaaccct
ttggtggcgctaaacctcttcaaaaggattccccaagaagacatcaccctgctgctaatg
aaccctgaggcagggaaacctgcggacctcatcctcacccgcctcctggtgcctcctgtc
tgcattcggccctctgtggtcagcgacctgaagtcaggcaccaacgaggatgacctcacc
atgaagcttacagaaattatcttcctcaacgatgtaatcaaaaagcatcgcatgactggg
gctaagacccagatgatcatggaggactgggacttcctccaacttcagtgtgccctttac
atcaacagcgagctctctggcatccccctcaacatggcacctaagaaatggacaagaggc
tttgtgcagagactcaagggcaagcaaggtcgattcagaggaaacctctcagggaaaaga
gtggacttctcaggcagaactgttatttctcctgacccaaatttgaggatcgatgaggtg
gccgtccctgtgcatgttgccaaaatcctgacatacccagagagggtcaacaaagccaat
ctcgagctaatgaggaaacttgtgcgcaacggccctgaagttcaccctggtgccaacttt
atccagaatcgtcacacacagatgaaaaggtttttaaaatacggaaaccgtgagaagatt
gctcaggagctgaggtttggtgatgtggtagagaggcacctgatagatggagatattgtc
ctattcaatcgacaaccttctctgcacaaactcagcatcatggcccacattgccagagtc
aaaccacacaggacgtttcgctttaacgagtgtgtgtgcaccccctacaatgccgatttt
gacggtgatgaaatgaatctccatttacctcagactgaagaagccaaagctgaagcactt
gtcctaatggggacaaaagctaatcttgtaactccaagaaatggcgagcctctgattgct
gctattcaggactttctgacagcggcctacctcttgaccctgaaggacaccttctttgac
agatcaaaggcctgtcagatagtggcatctatccttgtagacaaagatgaaaaaatcaga
atctctctcccccacccatctataataaagcccatggctctctggacaggcaaacagata
ttcagcctcattctgaagccaagtaaggaatgtccagtcaaggcaaatctgcggaccaag
ggcaaacagtacagtggaaagggagaggatctctgttccaatgactcatttgtggtgatc
cacaacagtgagctgatgtgtggtaccatggacaagggcaccttgggatctgggtccaag
aacaacatcttctacatcttgctgagagactggggacagcaggaggctgccagtgccatg
tcccgccttgcacgactcgctccagtgtatctttccaacaggggcttttccattggcatt
ggggatgtgacacctggtcagggtctactgaaggccaaacaggacctgctggatgacggt
tacgagaagtgtgacgaatacattgaagctctgaaaacgggcaaactgcagcagcagccc
ggctgcacagcagaggagaccttggaggctctaatcttgagagaactgtcagtcatcaga
gaccgagctggcagtgcctgcctcagggagcttgacaagagcaacagcccattgattatg
gctctttgtggctccaaaggatccttcattaatatctctcagatgatcgcctgtgtgggc
cagcaggccataagtggctctcgagtacctgatggttttgaaaatcgctccctgcctcac
tttgaaaagcactcaaaactgcctgctgctaaaggctttgtggccgacagcttctattct
ggcctgacacccacagagttcttctttcacacaatggctggtcgtgagggtctggtggac
actgctgtgaaaactgcagagactggatacatgcagagacgtctggtaaagtccctggag
gatttgtgctctcagtacgacctgacagtacggagttccacaggtgacatcattcagttt
atttatggtggagatggtctggaccctgctgcgatggagggaaaggatgagccgctggag
tttaagagagtcttagacaatatccgggcggtctacgcgtgtccagacgagcctgcactc
agtcaaaacgagctggtcctcaccgcagatgccatcatgaagagaactgacttcttgtgc
tgcagagacagctacttggaggagataaagaagtttattaagagcgtctcagaaaggatc
aagaagacgagagacaagtacggtatcaacgacaacggcaccagcgagccaaaagttctc
tatcagctggaccgcataacccccaaacagctggagaagtttcttgaaacctgcagagac
aagtacatgagagctcagatggagccgggctctgcagtcggggccctgtgtgcccaaagt
atcggagagcctggtactcagatgactcttaaaactttccactttgctggtgttgcgtcc
atgaatatcactcttggtgtgcctcgcataaaagagatcatcaatgcctccaagaacatc
agcacccctataatcactgctcatttggatgtggaggatgacgctgattttgccagactg
gtgaaggggaggattgagaaaactctcctgggagagatttccgaatacatagaagaggtt
tttctaccagatgattgttttatcctggtaaaattgtcactggagagaatacggctgctg
cgactggaggtaaatgcagaaacggtgcgttactccatctgtatgtctaaactgcgagtg
aaaccaggtgacattgctgtgcacggtgaggctgtggtgtgtgtgtctccacgagagaac
aacaaaagctccatgtactacgttctgcagtctttaaaagaagaacttcctaaggtggtg
gttcaaggaataccggaagtttccagagctgttattcacattgacgaacagagtggcaag
aacaagtacaaactcctggtggagggcgacaacctcagagctgtcatggcaacgcatgga
gtgaatggaagcaggaccacttccaacaatacttacgaggttgagaagaccttgggtatt
gaggctgctagatcaacaatcatcaatgagattcaatacaccatggtgaaccatggaatg
agcattgatcggcggcatgtcatgcttctcgcagatctcatgtcctataagggggagata
cttggaatcaccaggtttggtttagccaaaatgaaggagagcgtcctcatgctggcctcc
ttcgagaaaactgctgatcacctctttgatgctgcgtactttgggcagaaggactcagtc
tgtggtgtgtctgagtgcatcattatggggattccaatgaatattggaacaggactgttt
aaactgctacacaaggctgaaaaggatccctctccagtcaaaaggcctctcctctttgaa
aatgcagacttccatatacctcttatcacatag
DBGET
integrated database retrieval system
