KEGG   Scomber scombrus (Atlantic mackerel): 134003448
Entry
134003448         CDS       T10651                                 
Name
(RefSeq) ras-related protein Rab-5C-like
  KO
K07889  Ras-related protein Rab-5C
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04137  Mitophagy - animal
ssco04144  Endocytosis
ssco04145  Phagosome
ssco04148  Efferocytosis
ssco05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    134003448
   04145 Phagosome
    134003448
   04137 Mitophagy - animal
    134003448
   04148 Efferocytosis
    134003448
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    134003448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssco04131]
    134003448
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    134003448
   04031 GTP-binding proteins [BR:ssco04031]
    134003448
Membrane trafficking [BR:ssco04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    134003448
 Endosome - Lysosome transport
    134003448
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   134003448
  Exosomal proteins of other body fluids (saliva and urine)
   134003448
  Exosomal proteins of colorectal cancer cells
   134003448
  Exosomal proteins of bladder cancer cells
   134003448
GTP-binding proteins [BR:ssco04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    134003448
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU MMR_HSR1 Gtr1_RagA RsgA_GTPase AAA_16
Other DBs
NCBI-GeneID: 134003448
NCBI-ProteinID: XP_062298643
LinkDB
Position
21:complement(14836744..14842319)
AA seq 221 aa
MAGRGGGASRPNGAAAANKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL
TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL
QRQASPNIVIALAGNKADIANKRAVDLQEAQTYADDNSLLFMETSAKTAMNVNEIFMAIA
KKLPKNDPQGGAGPGGRTRTGVDLQEAAPQGRSSQCCGGSN
NT seq 666 nt   +upstreamnt  +downstreamnt
atggcgggacgtggtggaggagcatccaggcctaatggtgccgcagcagcaaacaaaatc
tgccagttcaaactagtgctgctgggggagtcagcggtgggaaagtcgagcctggtcctg
cgttttgtgaaaggccagttccatgagtaccaggaaagtacaattggagctgccttcctg
acacagaccgtctgtctggatgacaccactgtgaagtttgagatctgggacacagcgggt
caagagcgctaccacagcctggctccgatgtactacagaggagcccaggcagcaatcgtg
gtctacgacattactaacacagatacttttgcacgagcaaaaaactgggtgaaggagttg
cagagacaagccagtcccaacatagtgatcgctctggccggcaacaaggcagacattgca
aacaagagagctgtagatcttcaggaggcacaaacatatgctgatgacaacagtctactc
ttcatggagacgtcagccaagactgccatgaatgtcaatgaaattttcatggctattgca
aagaagctaccgaagaacgatcctcagggtggagctggaccaggagggcggaccaggaca
ggagtggacctacaagaagccgctcctcagggccgcagtagccagtgctgtggtggcagt
aattag

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