Scomber scombrus (Atlantic mackerel): 134003470
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Entry
134003470 CDS
T10651
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssco03016
]
134003470 (trub1)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
134003470 (trub1)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
134003470 (trub1)
Prokaryotic type
134003470 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Pus10_C
Motif
Other DBs
NCBI-GeneID:
134003470
NCBI-ProteinID:
XP_062298674
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Position
21:1429038..1437789
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AA seq
278 aa
AA seq
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MAGNISNSASPLTSSLSKLQSLNGLFAIYKKQGPTSADVLNTLKETLLKEAGVKDPNPRK
RKKQSLKMGHGGTLDSSASGVLVVGVGNGTKMLSTMLAGSKKYVAVGELGKATDTLDASG
SVTLEKDFEHVTRVDIEEKLKHFVGDIMQVPPLYSALKKDGQRLSVLLKKGHKVEAKPAR
AVSVYNLTLQEFKPPVFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGQFTLE
EHTLHEEHWTLEHILKSLQPCSESEPAQDCTKPPQVDT
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaacataagtaacagcgcatctcctctaactagttctctgtctaaactacag
tctctcaacggactgttcgctatttataaaaaacaaggaccgacatctgcagacgtcctc
aatacactcaaagaaactttactaaaggaggctggtgtgaaggatccaaacccgagaaag
aggaagaagcagagtctgaagatgggtcatggagggacgctggacagctctgccagcggg
gtgctggttgttggtgttgggaatggcacaaaaatgctcagcaccatgttggctggttct
aagaaatacgtcgctgtgggagaactgggaaaagcaacagatacgcttgatgcgtctggc
agcgtgactctggagaaagactttgaacacgtcaccagggtggacatcgaggagaagctg
aaacattttgtgggtgatattatgcaagtccctccactttactctgcgctgaaaaaagat
ggccagcgtctgtctgtcctgctgaagaaaggtcacaaagttgaggccaaacctgccaga
gcagtgtctgtgtacaacctgaccctgcaagagttcaagccccctgtcttcactctggat
attgaatgcggtggaggattttatgtgagaagcttggtggatgatctgggaaaagctctg
tcgtcatgtgctcatgtcaaagagctgatccgtaccaagcagggtcagttcaccctggag
gagcacaccttacatgaggagcactggacactggaacatatcctcaaatcactgcagccc
tgctcagagtcagagccggctcaggactgtaccaaaccgccacaggtggacacctga
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