Scomber scombrus (Atlantic mackerel): 134003578
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Entry
134003578 CDS
T10651
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
134003578 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134003578 (usp42)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
134003578 (usp42)
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
134003578 (usp42)
Ubiquitin system [BR:
ssco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
134003578 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
134003578
NCBI-ProteinID:
XP_062298802
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All DBs
Position
21:9575615..9585221
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AA seq
1224 aa
AA seq
DB search
MTIVDRSSEKSDHESVGCKRSPFTSGDVGMDGSCSSSWAMGPTLPSDSPRLKAPGGCLGP
TPGAAVYNTTPSSVDRPKEQVISGGDGIDMPQKVLFSPDRLNLKWTQVHRIGAGLQNMGN
TCFLNSALQCLTYTPPFANYMLTREHSKTCHEPGFCMMCTMQNHIIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGTKLDRQTQATTFIHQVFGGYLR
SRVKCLNCKAVSDTFDPFLDITLEIKTAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSANVLTLSLKRFANFSGGKITKDVKYPEYLDLRAFMSQSQGEPQVYGLYAV
LVHSGFSCHAGHYFCYIKASNGQWYQMNDSSVSVTDIRSVLNQQAYVLFYIKSSDVKKTG
DYSHMSHNPAIPGQSSPRPVVIPRINTTVHHNIGFIGPQLPPHMTKSALHVNGNGSMRDY
PTSSKPSTSNSVVVKPNHGLGSSSSISHSISRPTVIPDHDKRQKLSFFIGQGKQNRPSSS
SSYSQPSSASSSSSSCSSSSSSSSSSSSSSSLSSSSQSTSDVRFVPRQLNHVNGSASCSN
GNHHPGGNGASFLVPYGQESSEESDQENCGTLDNGCLAKSHLNGNNRTDDVFDKAPQATN
GESGAHHNGNGLNGPTNGVSKSSQNGHHNGHHKVNGHNTPDKISGSNNGSLTSEATVAVN
GLDSNHTQTSKEIHTCATAQANSVQSIQPAASESQHLSTPDTRTKTVSDPAPQHTEPSAV
SSPPTATATDTHPVASREPASSSAHHGNPAALSNPPDGSTRICAAAPQKDSISGDEAKDP
PQTNSPSAGTEGRTDAKEQLQSNPSSRGSEKQSSRERERDRPYSSDWSRDRDRHYRDRSQ
ERDNDGDRYRYRREYRDYNHHRSYRDRLPTHDRSYKDWEPERRWERTVHHPRERDRDRCS
NHYHHNHHQRYRDDRNRERRGYGYPHREESHSRSRWQQDSRDSRTTKDKSNGRERDYHSA
KEETSSPSAMPETSTKSKGSPPRAPLSTSGSASNREDQNHKRTSVPLSKDRDDSSEARHA
KKHKKSKKKKKSKDKDRHHESGSSDVDSDRAAETKKKKKKKKRQHSPSSAPSHKAGSSEE
RESRKRRYYDTKNSKHDDACSPEKRRRTDYTDSNSDHLISSQHTSPTENGSKHRHLNGYT
GNGYSRTNGNSHGFSAGLSSTMKH
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagaaaagtctgaccacgagtcagtcgggtgtaagcga
tcccccttcaccagtggagacgtggggatggatggcagctgttccagcagctgggcgatg
ggtcccaccctgcctagtgactccccgcgtctaaaggctccaggaggctgcctgggcccg
acgcctggagctgccgtctacaacactacaccctcctctgtggaccggcccaaagagcaa
gtgataagcggcggtgacggcattgacatgccccagaaggtcctcttctctcccgatcgg
ctcaacctaaagtggacccaggttcatcgcatcggtgcgggcctgcagaacatggggaac
acctgcttccttaactcagccctgcaatgtctcacctacacgcctccgtttgccaactac
atgttgacaagggagcactctaaaacatgtcacgagccggggttctgtatgatgtgcacc
atgcaaaaccacatcattcaggttttcgcgaactctgggaatgtcattaagcccatcggt
gtgctcaatgagctcaaaaggattgcaaagcacttccgctatggaagccaggaggatgcc
catgagttcctgcggtacacagtggatgctatgcaaaagtcctgcttacctggaaccaaa
ttggacaggcaaacgcaggcaaccactttcatccatcaagtatttggcgggtacctaaga
tccagagttaaatgtttaaactgcaaagcagtctctgatacgtttgacccttttctggat
attactctggaaattaagacggctcccagtgtctccaaggctctggagcagtttgtcaag
cccgaacagctggacggagaaaacgcctacaaatgcaccaagtgcaaaaaaatggtgaca
gcctcaaagagatttaccatccaccgcagcgccaatgtgctcaccctctcactcaaacgc
tttgcaaacttcagtggaggcaaaatcacaaaggatgtgaaataccctgagtacctggat
ctgcgggccttcatgtctcagtcccaaggagagccccaggtttacgggctgtatgctgtg
ctggtccactctggattcagctgtcatgctggacactatttctgctatattaaggcaagc
aacggtcaatggtatcagatgaacgactcgtctgtatcagtcactgacatcaggtctgtt
ctcaaccagcaggcctatgtccttttctacatcaagtccagtgatgtgaaaaagacaggg
gactacagccacatgagccataacccagccatccctggtcagtcgtctccacggccggtg
gtgataccacgcatcaacaccaccgtacaccacaacattggcttcattgggccccagctg
cccccacacatgaccaagagcgctctccacgttaacgggaatggatctatgagggactac
cccaccagttccaagcccagcaccagcaacagtgttgtggttaaaccaaaccacggtctg
ggctcctcctcttccatctcccactcaatcagccggcccacagtgatcccagaccacgac
aaacgccagaagctatcattcttcatcggacaaggcaaacagaaccgcccgtcctcctcg
tcctcttacagccagccgtcctctgccagtagctcctcctccagctgctcctcctcttcc
tcctcctcctcctcctcctcctcctctagctctttatcctcctcctcacagtctacctca
gacgttcgctttgttccgcgtcagcttaaccacgttaacggcagtgcgtcttgcagtaac
gggaatcaccaccctggagggaacggagcgtcctttttggtgccgtacggccaagagtct
tcggaggaatcggaccaggagaactgcggcactctggataacggttgtttagccaagtct
cacctcaacggaaacaaccgaacagacgacgtgtttgataaagcccctcaagccaccaac
ggggagtcaggagcgcaccataacggaaacggtttaaacggaccaaccaatggcgtctct
aaatccagccagaatgggcatcataatggacaccacaaagtcaatggacacaatacgcct
gataagatctctggtagtaataatggcagtttgacctcggaggctactgttgctgttaat
ggactagacagcaaccatactcaaacaagcaaagagattcatacttgtgccacagcccag
gccaactctgttcagagcatccagcctgctgccagtgaaagccagcacctctccactcct
gacacaaggactaaaactgtgtccgatcccgcgcctcagcatacagaaccctctgccgtc
agctctccgcctacagccaccgctaccgacacccatcccgtcgcatctagagaacccgct
tcctcttcggcacatcacggcaaccccgcggccttatccaacccgccggacggctccacc
aggatctgtgcagcagctccgcagaaggatagcatcagtggggatgaagcgaaggatcca
ccgcagaccaatagtccatcagcggggaccgaaggacgtacagatgctaaagagcagctc
cagtccaatcccagttctagaggcagtgaaaaacaatcttcccgagaaagggagagagac
agaccgtactcctctgactggagcagagaccgggacagacactacagggacaggagtcag
gagcgagacaacgacggcgatcgttaccggtacagacgagagtaccgagactacaaccat
catcgttcatacagggatcgtttgcccactcacgaccgctcctacaaggactgggagccc
gagcgtcgctgggagcggaccgttcaccacccgagggagcgcgatcgagacaggtgctct
aaccattaccaccacaaccaccaccaacgatacagagatgaccggaaccgtgagcggagg
gggtacggctacccccaccgcgaggagtctcacagtcgctcgaggtggcagcaggacagt
cgagactctcggacgacgaaggacaagagcaacggcagggagagggactatcactctgca
aaagaggagacttcttcgccctccgctatgccagaaacatccaccaagtccaagggttca
cccccgcgggctcctctctccacatctggatccgcttcaaacagagaagatcaaaatcac
aagaggacttctgttcctctgagcaaagaccgggacgacagctcggaggcccgacacgct
aaaaaacataaaaagagcaagaaaaagaagaagtcgaaggataaagacagacaccatgag
agcggaagctctgacgtggattcagacagagccgccgaaacaaaaaagaagaagaagaaa
aagaagaggcagcacagcccgagctcagccccgagccacaaggccggaagcagcgaggaa
agggagagccgcaagcgacgatactacgacacaaagaactctaaacacgacgacgcttgt
tctccggaaaaacgcaggcgcacagattacaccgacagcaacagcgatcacctcatctcc
tcccagcacacctcacccacggagaacggttcaaaacaccgccacctcaacggatacaca
ggaaacggttacagccgaaccaatggaaactcccacgggttctccgctggcctgagcagt
accatgaaacactga
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