Scomber scombrus (Atlantic mackerel): 134003741
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Entry
134003741 CDS
T10651
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134003741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134003741
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134003741
Spliceosome [BR:
ssco03041
]
Complex C
Other components
Step II factors
134003741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
GIPC1_GH2
nSTAND3
AAA_16
T2SSE
Flavi_DEAD
PhoH
TsaE
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
134003741
NCBI-ProteinID:
XP_062299030
LinkDB
All DBs
Position
21:complement(22338463..22349351)
Genome browser
AA seq
1231 aa
AA seq
DB search
MAEGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKEPSFDGFKALLLQN
GAEFTDSLVGNLLRLIQTMRPPSKGSTSKAVYEDVVKPKSEKEKLKELFPALCRANDPAP
KKLLDEDDVKVAADAMKELEMFMPSVSVPETKPSKSRSEKSRRHSRSRSRSREKDRHRDR
DRDRDRDRDRDRDRDRKRRHRSRSKSRSRSRDRDRHRERDRDRDHGKRRDKSSRWTERSP
SPRKDQEKDKDKERDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKR
WEGLVHISELRREGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNR
RRNVGPDGGEEITMRNPDRPSNLNLGNAPEMEQDDTLERKRLTKISDPEKWEIKQMIAAN
VLSKEEFPDFDDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPD
GSLSQAAMMQSALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIG
MMPNDIPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGE
TGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFE
DCTSPETVIKYMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVMKRT
DMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHL
TEPPGDVLVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAP
PGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAG
RAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAP
PMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIV
SMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQA
RSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLID
QQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPTFFKVSDPTRL
SKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggcagagggcggcgtggatgagctttcacagcttgaatacctgtctctggtgtccaag
gtgtgcacggagcttgacaaccatctgggaataagtgacaaagatctagctgaatttgtc
atcagtctcgctgaaaaagagccgtcctttgatggatttaaagctcttttgctgcaaaat
ggagccgaattcacagattctctcgtcggtaatttgctcagactcattcagactatgcga
cccccatccaagggttctacaagtaaagcagtatatgaagatgtggtcaagccgaagtca
gaaaaagaaaagttgaaggagttgtttcctgcgctgtgtcgggcaaatgatccggcacca
aagaaactactcgacgaagatgacgtgaaagtagcagctgatgccatgaaagagctggag
atgttcatgcccagtgtcagcgtgccagaaacgaaacccagcaagagcaggtcagaaaag
agcagacgtcacagccgcagtcgcagcagaagcagagaaaaggacagacacagggataga
gatagagacagagatcgggacagagacagagaccgtgacagggacaggaagaggcgtcat
cgctctcgctctaaatccaggtctcgctccagagaccgcgatcgtcacagagagagagac
cgagacagagaccacggcaaacgaagggataaatcttcccgttggaccgaacgctcgccg
agccccagaaaggaccaagaaaaagacaaagacaaagaaagagactctgaccgctggaag
gacaaacacgtggaccgccctccgccagaggagccgtctgtcggtgacatctataacggc
aaagtgaccagcatcatgcagtttggatgcttcgttcagctggagggactgaggaaacga
tgggagggtttggtacatatttcagagctgcgtagagagggccgcgtggccaacgttgcc
gatgtggtcagcaagggccaaagagtcaagatcaaagtgctttcattcaccggctccaag
accagcctcagcatgaaggatgtggaccaggagacgggagaagatctaaaccccaacagg
aggaggaacgtaggccctgatggaggggaggagataaccatgaggaaccccgaccggccg
agcaacctgaacctgggcaacgcccccgagatggagcaggatgacacactggagcgcaag
aggctcaccaaaatttctgatccggagaaatgggaaatcaaacagatgatcgctgccaac
gttttgtccaaggaggagttccctgatttcgacgatgagacaggaatccttcctaaagtt
gatgatgaagaggacgaagacttggaaattgagcttgttgaagaggagccgcctttcctg
aggggacacaccaaacaaagcatggacatgagccctgtaaagattgtcaagaatccagat
ggctctttgtcccaggcggccatgatgcagagcgctctggcgaaggagcggcgagagctg
aagcaggcggcacgcgaggcagaaatggactccatccccatggggctaaacaaacactgg
gtcgacccgctgccagacgctgatggtcgccaaattgcagccaacatgagaggcatcggc
atgatgcccaatgacattcccgagtggaagaagcacgcttttgggggcaacaaggcctcc
tacggaaagaagacccagatgtctattctggagcagagggagagtctgcccatctacaag
ctgaaggagcagctcattcaggctgttcatgacaaccagattctgatcgtcattggagaa
accgggtccggtaagaccacgcagatcactcagtacctggcagaggccggttacaccacc
cgaggaaagatcggctgcactcagcctcgtcgtgtggccgccatgtccgtggccaagaga
gtctctgaggagtacggttgctgtttgggacaagaggtgggttacaccatccgttttgag
gactgcaccagccctgagacggttatcaagtacatgacagacggtatgctgttgagagag
tgtctcatcgactctgagctgggtcagtacgccatcatcatgttggacgaagctcacgag
aggaccatccacactgacgtcctctttggtctgctcaagaagactgtaatgaaacgcaca
gacatgaagctgatcgtaacgtcggctacgctggacgccgttaagttctctcagtatttc
tacgaagctcccatcttcaccatccccggtagaacgtatccagtcgaggttctctacacc
aaagagcctgagacggactacctggatgccagtctcatcactgtcatgcagatccatctg
accgaacctccaggtgacgtcctggtcttcttgactggacaggaagagatcgacacagcc
tgtgagatcctctatgagcgaatgaagtctctgggtccagatgttcctgaactgatcatc
ctgccggtctactctgctctgcccagtgagatgcagaccagaatctttgaccctgcaccc
ccaggcagcagaaaggtggtcattgctacaaacattgcagagacgtctctgaccatcgat
ggaatctactatgtagtagatcctggcttcgtcaagcagaaagtttacaactctaagaca
ggcattgaccagctggtggtgacccccatctcacaggctcaggccaagcagagggcaggt
cgagccggcagaacaggcccggggaaatgttacaggctctacacagagagagcttacaga
gacgagatgctgaccaccaacgtgcctgagatccagagaaccaacttggccagcactgtg
ctgtctctgaaggccatgggcatcaatgacctcctgtcttttgacttcatggacgctcct
ccgatggagactctgatcacagccatggagcagctctacactctgggagctctggacgac
gagggcttactcacccggctgggtagaaggatggctgagttccctctggagcccatgttg
tgtaagatgttgatcatgtccgtccatctgggctgcagtgaagagatgctcaccatcgtg
tccatgctgtctgtgcagaacgtcttctacaggccaaaggataagcaggcgttggctgac
cagaagaaagcaaagttccatcaacctgaaggtgaccatctcacgctgctggccgtctac
aactcctggaagaacaacaagttctccaacccctggtgttacgagaacttcatccaggct
cgctccctgcgtagagcccaggacatccgcaaacagatgttgggtatcatggacaggcat
aaactggatgtggtgtcttgtggcaaagcaacagttcgtgtccagaaagccatctgcagt
ggtttcttcaggaacgctgccaaaaaggatcctcaggaaggctaccgaaccctcatagac
cagcaagttgtctacatccatccctccagcgctctgtttaaccgtcaacctgagtgggtt
gtgtaccacgagttggtgctgaccaccaaggagtacatgagagaggtgaccaccatcgac
cctcgctggctggtggagttttcaccaaccttcttcaaagtgtccgacccaacgcgtctc
agcaagcagaagaaacaacagcgtctggagccgctctacaaccgctacgaagaacccaac
gcctggagaatctctcgtgctttcagacggcgctga
DBGET
integrated database retrieval system
