Scomber scombrus (Atlantic mackerel): 134003742
Help
Entry
134003742 CDS
T10651
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134003742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134003742
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134003742
Spliceosome [BR:
ssco03041
]
Complex C
Other components
Step II factors
134003742
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
Flavi_DEAD
AAA_19
ABC_tran
GIPC1_GH2
T2SSE
PhoH
nSTAND3
AAA_30
ATPase
AAA_16
NB-ARC
TsaE
Cas3-like_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
134003742
NCBI-ProteinID:
XP_062299033
LinkDB
All DBs
Position
21:complement(22324173..22336946)
Genome browser
AA seq
1208 aa
AA seq
DB search
MAALDEIQRLEYLSLVSKVCTELENHLGISEKDLAEFIISLAEKHPTFAQFKAVLTENGA
DFTDTLIGNLLRLIQTMRPSPSTSKASQQEVKPKSEKDKMKEKYPALCKPDAPAWKIPPQ
HTDKDDEQVAAAAMKELEMLMPNVCGTSSDYRSGDRGRDPNRESGHQRNRSRSRSREREG
EPNPKRRRKRPSRWSDRPPSPPVPPVDVSSSSNNINNINNININININNNINKEETESDR
FHDRLADRPLSDQPVVGTVYIGKISSIMQFGCFVQLEGLRKRWEGLVHISELRKEGRIAN
VADVVTKGQKVKVKVLSFTGTKASLSMKDVDQDTGEDLNPNRRRNLDTGVGDEAMRNPDR
PVEASILEIEENTTERKRLAKITDLEKWEIKQMIAANVLPKEEFPEFDEETGILPNINED
EDEEIEVDLVEEEPPFLRGQTKWTMNLSPVKIVKNPDGSLSQAAMMQSALAKERREIKQA
VRAAEMDSIPTGLNKHWIDPMPDFDGRQIAANMRGIGAMPIDLPEWKRYAFGGNQVSYGQ
KTELSILQQRESLPIFKLKEQLIQAIHDNQIMIVVGETGSGKTTQITQYLAEAGYTARGK
IGCTQPRRVAAMSVAKRVSEEYGCRLGQEVGYTIRFEDCTSTETVIKYMTHGMLQRECLV
DSDMSQYSIIMLDEAHERTIHTDVLFGLLKKTILKRKDMKLIVSSATLDAVKFSQYFFEA
PIFTIPGRTFPVEILYTKEPETDYLDASLITVMQIHLSEPPGDVLVFLTGQEEIDTACEI
LYERMKSLGPDLPELIILPVYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIY
YVVDPGFVKQIVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEM
LTTNVPEIQRTNLASTVLSLKAMGINDLLAFDFMDAPPMETMITAMEQLYTLGALDDEGL
LTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNIFYRPKDKQAQADQRK
AKFFQLEGDHLTLLAVYNSWKNNKFSNPWCFENFIQARSLKRAQDIRKQMLSIMDRHKLD
VVSCGKASMRVQKAICSGFFRNAARKHPQDGYRTLIDQQVVYLHPSSTLFNRQPEWLVYH
ELVLTTKEYMREVTTIDPRWLVEFAPAFYRVGDPTRLSRQKRQQKLEPLYNRYEEANAWR
ISRAFRRR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggctgctttagacgaaatacaacgcctggagtatttatctctggtatctaaggtgtgc
acggagttggaaaatcatctgggaataagcgagaaagatctagctgaatttatcatcagc
ttggcagaaaaacatccaacatttgctcagtttaaagctgtcctgacagaaaatggagca
gattttacagatactctcattggtaatttactccgacttattcaaactatgcgaccatca
ccttccaccagtaaagcatcccagcaggaagttaaaccaaagagtgagaaggataagatg
aaagagaaatatccagctttatgtaaaccagatgcacctgcgtggaagattccacctcaa
cacactgataaagatgacgagcaggttgctgcagcagccatgaaggagttggagatgctc
atgccaaacgtgtgtgggacaagctctgattacaggtcaggtgacagaggccgagaccca
aacagagagagcggacatcagcgaaatcgttcacgctcccgatcgagagaacgggaagga
gaaccaaaccccaagcgcaggaggaaacggccgtctcgatggagcgatcgacctccgagc
ccacctgtcccacctgtagacgtcagcagcagcagcaacaacatcaacaacatcaacaac
atcaacatcaacatcaacatcaacaacaacatcaacaaggaggaaacagaatcagaccgc
ttccatgacagacttgcagatcggccgctgtcagaccagcctgttgtgggaaccgtctac
atcggcaaaattagtagtattatgcagtttggctgttttgtgcagctggagggcctcagg
aaacgctgggagggtctagttcacatctcagagttacgcaaagaaggtcgcatagcaaac
gtagctgatgtcgtcaccaaaggtcaaaaagtaaaagtcaaggtgctctcattcaccgga
accaaggccagcctgagcatgaaggatgtagatcaggacacaggggaggacctgaacccc
aaccggaggaggaacctggacaccggagtcggagacgaagcgatgaggaaccccgaccgt
cccgttgaagccagcatcctcgaaatagaagaaaacacaacggagcgtaaaaggctcgcc
aagataactgacctggagaaatgggagataaaacagatgattgccgccaacgttcttcct
aaagaagaattcccagaatttgacgaggagacgggaatccttcccaacataaacgaagat
gaagatgaggagatagaggtagatctggttgaagaggagccaccattcctgagaggacag
actaagtggaccatgaacttgagcccagtcaaaatagtaaagaacccagacggctccctt
tcccaagccgccatgatgcagagcgctttggcaaaggagaggcgagagatcaagcaggcg
gttcgcgcggcagagatggactctatccctactggtctcaacaagcactggattgacccc
atgcctgactttgatggaagacagatcgctgccaacatgagaggcatcggcgcgatgcct
attgatcttcccgagtggaaaagatacgccttcggagggaaccaggtgtcgtatggccag
aagacagaactctcaatcctgcagcagagagagagcctgcctatttttaaactgaaggaa
cagctcattcaggctatccacgataatcagatcatgattgtagttggagaaaccggttcc
ggtaagacgacgcagatcactcagtacctggcagaggccggttacaccgcccgggggaag
atcggttgtacgcagcctcgtcgtgtggccgccatgtctgtggctaagagagtctctgag
gagtacggttgccgtctaggccaagaggtgggttacaccattcgttttgaggactgcacc
agtacagagacggtaatcaagtacatgacccatggcatgctgcagagggagtgtctggtg
gactctgatatgagtcaatattccatcatcatgctggacgaagcccacgagagaacaatc
cacactgatgtgctgtttggtctgctcaagaagacgatactgaaacgtaaagacatgaag
ctgatcgtgtcctcggcgacgctcgacgctgtcaagttctcccagtatttctttgaagct
cccatcttcaccatcccaggaagaactttcccagtagagattctctacaccaaagagccg
gagacagactatctggatgccagtctcatcactgtcatgcagatccatctgtctgagcct
ccaggtgacgtcttggtgtttctgaccggacaggaagagatcgacaccgcttgtgagatc
ctgtacgagagaatgaagtctttggggcctgatcttcctgaactgatcatcctgccggtc
tactctgctctgcccagtgagatgcagacgaggatattcgaccctgcacctccaggcagc
agaaaggtcatcattgccaccaacattgccgagacatctctgactattgatggcatctac
tacgtggtggatcccggctttgttaagcagattgtgtataattccaaaactggcattgat
cagcttgtggtgactcccatatcacaggctcaggccaagcagagggcaggtcgagccggc
agaacaggcccggggaaatgttacaggctctacacagagagagcttacagagacgagatg
ctgaccaccaacgtgcctgagatccagagaaccaacttggccagcaccgtgctgtctctg
aaggccatgggcatcaatgacctcctggcatttgacttcatggacgctcctccgatggag
actatgatcacagccatggagcagctctacactctgggagctctggatgatgaaggctta
ctcacacggcttggtagaaggatggctgagttccctctggagcccatgttgtgcaagatg
ttgatcatgtccgtccatctgggctgcagtgaagagatgctcaccatcgtgtccatgttg
tctgtgcagaacatcttctacagaccaaaggacaaacaggcccaggccgaccagagaaag
gcaaagttcttccagctcgagggagaccatctcactctgctggccgtctacaactcctgg
aagaacaacaagttctccaacccctggtgttttgagaacttcatccaggctcgctcctta
aagagagcgcaggacatccgcaagcagatgttgagcatcatggacaggcacaagttggac
gtggtatcttgcgggaaagcttcgatgcgggtccagaaagctatttgcagcggtttcttc
aggaacgctgccaggaaacaccctcaggatggttaccgtaccctgattgaccagcaggtg
gtgtacctccacccctccagcacgctctttaaccgccaaccagaatggcttgtgtaccac
gagttggttctgaccactaaggagtacatgcgtgaggtgaccaccatcgaccctcgctgg
ctggtggagtttgctccagctttctacagagtgggcgaccccacgcgcctcagccggcag
aagaggcagcagaagctcgaacctctctacaaccgttacgaggaagccaacgcctggaga
atctctcgagcgttcaggcgacgctga
DBGET
integrated database retrieval system
