Scomber scombrus (Atlantic mackerel): 134003813
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Entry
134003813 CDS
T10651
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1-like
KO
K17908
autophagy-related protein 18
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04136
Autophagy - other
ssco04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134003813
04136 Autophagy - other
134003813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134003813
03029 Mitochondrial biogenesis [BR:
ssco03029
]
134003813
Membrane trafficking [BR:
ssco04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
134003813
Mitochondrial biogenesis [BR:
ssco03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
134003813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR19_1st
EIF3I
Beta-prop_Vps41
Beta-prop_RSE1_2nd
CPSF_A
BCAS3_WD40
Beta-prop_NWD2_C
RMC1_N
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
134003813
NCBI-ProteinID:
XP_062299151
LinkDB
All DBs
Position
21:complement(9887916..9894606)
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AA seq
443 aa
AA seq
DB search
MESQEAPDGPEVHRGFICASFNQDTTSLSVGTKTGYQLFSVTAAEKLDCIHEGVECPDVY
IVERLFSSSLVVVVSLSMPQRMNVYHFKKGTEICNYSYSNNILSVRLNRQRLVVCLEESI
YIHNIKDMKLLKTLLNTPINPSGLCALSVNHSNSYLAYPGSATIGEITVYDANSLSTVTL
IQAHDSPLAALTFNASGTKLASASEKGTVIRVFSIPEGQRLFEFRRGMKRYVSISSLSFS
ADAQFLCASSNTETVHIFKLEQHSPSQEEESPTWSAYVGKMFTAASTYLPAQVSDMMHQD
RAFATVRLNMFGLKNICALATIQKLPRLLVASSDGYLYIYNVDPQDGGECVLVQKHRLFD
TSEEQVEEKEEEKLEDDSPQPVGQSYAATVALPSTPPSSTTLMGYSEDGGAQKGEVIPEH
EFAESPVCLDDENEFPPVSNQSN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccaggaagcgccggacggccccgaagtgcaccgaggcttcatctgtgcctcg
tttaaccaggacaccacttctctgtcggtgggcaccaagactggctaccaactcttctca
gtcactgctgcggaaaaactggactgcatccatgagggagtggagtgtccagatgtgtat
atagtggagcggctgttctccagcagtctggtggtggtggtcagtctgtccatgccacag
cgaatgaacgtctatcactttaagaagggcacagagatttgtaactacagctactccaac
aacatcctctccgtcaggctcaacagacagcgactggtggtgtgccttgaggagtcgatt
tacatccacaatatcaaagacatgaaactacttaagactctgctcaacacacccatcaac
ccctcaggtctctgcgccctctctgtcaaccacagtaactcctacttggcataccccggc
agcgccaccatcggagagatcacggtctatgatgccaacagcctgagcactgtgacgctg
atccaagcccatgacagtcctctggcagccctcaccttcaatgcctctggcaccaaactg
gccagcgcttcagagaagggtactgttatcagagtcttcagcattcccgaagggcagagg
ctgtttgaattccgccgagggatgaagagatatgttagcatcagttcattgtccttcagt
gcagatgcccagttcctgtgtgcctccagcaacactgagacagtccatatttttaaactg
gagcagcacagtccaagtcaagaggaggagtctcctacatggtcagcgtatgtgggcaaa
atgttcacagcggccagcacctacttacccgcccaggtgtctgacatgatgcatcaggac
agagccttcgccactgttcgactcaacatgtttggcttaaagaacatctgcgccctggct
accattcagaagcttcctcgcctgctggtggcatcctcagacgggtatctttacatctat
aatgtggacccacaggatggaggagagtgtgtcctggtccaaaaacacagactgtttgac
accagcgaggagcaggtggaagagaaggaagaggagaaactagaggatgactcgccccaa
ccagtcggccaatcatatgctgccactgtggctctcccttcaactccaccctcttccacc
actctcatgggatactctgaggacggaggagcccagaagggtgaggtcatcccagaacat
gaattcgcagagagccccgtctgtctggatgacgaaaatgagtttcctcctgtcagcaac
cagagtaactga
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