Scomber scombrus (Atlantic mackerel): 134004176
Help
Entry
134004176 CDS
T10651
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134004176 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134004176
NCBI-ProteinID:
XP_062299337
LinkDB
All DBs
Position
3:complement(27914488..27949364)
Genome browser
AA seq
2002 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDEGERNTVPLTPLDSFFSDDESLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQARVDSDLEETSEVEEEREHPEIGSESESSMYGPTKKKKKKPKE
KKEKKPRKKKRDEEDDDDDDDDGNLKEPKSSGQLMQEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSSSQPSSQLGPIKKAKTKEGKGPGVRKRSKSVKEVKKKPKPKKTKSKSGQSGKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEE
EAPGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPL
KGKVQKILHWTWGEPPLPAELPAGPDGKPTDPLTKPPLKGHPEREFFVKWAGLSYWHCSW
VSELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPQYAVMEERFYRY
GIKPEWMVIHRILNHSFDTDGDVHYLIKWRDLPYDQCTWEVEDFDVPEYDSHKASYWDHR
EQILGEDQRPLVVRKGKKLKDDHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQL
EGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWE
REFEMWAPDFYVVTYTGDKDSRAISRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTS
YELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEE
LFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPSKTE
LIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE
APVLPNGSYDGNQLVKSSGKLTLLQKMLKNLKDEGHRVLIFSQMTKMLDLLEDFLEYEGY
KYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPH
NDIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMS
KQELDDILKFGTEELFKDEIEAARAMGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTE
IQNMNEYLSSFKVAQYMVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR
NLGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQ
LKSEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGK
SEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEH
VNGKLSSPDLIPIGMELKKLTESVSSDPNTPVPASPIATQPGTPIPPEKPESLLCAAEDK
ETSEHDSKKLSEQETSSAEAASVSEKAADSEESKASSEEKTGDERDRTESPSKKNEPSVN
SKEPTLRQSELSASQTSPKVELCKETEKCSEKGDTDYPLAKAEDKENKPDDLKNEDALEG
RLNGDKDMLDEMDESRREDRNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIW
HRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLL
EQALVIEEQLRRAAYLNMTQDASHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAV
LHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQPF
SQGGFGCSQMYSSSFGGGYRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSLDS
LRDVATPDLKSAKPSDVICIED
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgaggatgacgaaggtgaacgcaacactgttcccctcacgccgctcgacagc
ttcttctctgatgatgagtcactcaaacaacaaaagaagaagaagcccaaaaagatgaaa
gaagggaaaatgcccaaagttaagaagaggaaaaaggagggaggaatccaggcaagagtc
gacagcgacctggaggagacatcggaggtggaagaagagcgggaacatccagaaataggc
tctgagagtgagagtagcatgtatggccccaccaaaaagaagaagaagaaaccgaaggaa
aagaaagagaaaaaaccccggaagaagaagagagacgaagaagatgatgacgacgacgat
gatgatgggaacttgaaagaacctaaatcatccggccagttgatgcaagagtggggtctc
gaagacgttcagtatggcttcactgaagatgactataaaaccatcaccaactacaaggct
ttcagccagttcctcaggcctcttattgccaagaagaacccgaagattcccatgtcaaag
atgatgacagtgttaggggccaagtggcgagaattcagtgccaacaacccgttcaaaggc
gcatctgcaaccgctgtggccgccgctgtggctgccgctgtggaaacggtaaccgtggca
cagccaacgtctgtcagcagcagccagccgagctctcagctggggccaatcaaaaaagcc
aaaaccaaagagggaaagggaccaggagttagaaagagaagcaagagtgtaaaagaggtg
aagaagaaaccgaagccgaaaaagaccaaatcaaagtcgggccaaagtgggaagaagaag
aaagcatcctcgagtgaggaggactttctggaggagtcagactttgatgacatcagcatc
cacagtgcctctgtgctttctgatacctcgggggccgccaccaagaaaaaggcccgacgt
gggcggaaaaaaagaaaaaaggaggatggggacggctatgagacagaccaccaggactac
tgtgaggtttgccagcagggtggagagatcatcctatgtgacacctgtcccagagcgtac
cacctggtctgtctggaccctgagttggagaaggcccctgagggcaaatggagctgtcca
cactgtgagaaggaaggaatccagtgggaggcaaaggatgaggaggaggaggaggaggaa
gaggcaccaggagaggaagaagatgaccacatggagttttgccgagtgtgtaaagatgga
ggagagctactgtgctgtgacacctgcccatcatcctaccacatccactgtctcaacccg
cctctgcccgagatacccaacggagagtggttgtgtccacgctgcatgtgccctcctcta
aaaggaaaggtacaaaagattctccactggacatggggagaaccgccgctgccagctgag
ctgcctgcaggccctgatggcaagccaacagacccactgaccaaacccccactcaagggc
cacccggagagggaattctttgttaagtgggccggcctttcgtactggcactgctcctgg
gtcagcgagctgcagttggagctgtaccacaccgtcatgtatcggaactaccagcgtaag
aacgacatggacgaacctccgccatatgactacggctcaggagaggaggagctcaacaac
gagaagagaaagagcaaagacccccagtacgctgtgatggaggagcgcttctaccgctac
ggcattaaaccagagtggatggttatccacaggatactcaaccacagttttgatacagat
ggggatgtgcattacctgatcaagtggagagaccttccctatgaccagtgcacctgggag
gtggaggactttgatgtcccggaatatgacagccataaagcttcttactgggaccacagg
gagcaaattctaggggaggaccaacgccccctggtggtgaggaaaggaaagaaactcaag
gatgaccatccaaagagggaggtccctcctgatgctcccatcatagatcctacaatcaag
tttgagcatcagccatggtatattaatgccactggaggaacactgcacccataccagctg
gagggcctgaactggttgaggttctcctgggctcagggcacagataccatcctggctgat
gagatgggtctggggaagacggtgcagacaatagtgtttctctactccctttataaggag
ggtcactctaagggtcccttcttggtgagcgcacccctctccactattatcaactgggag
agggaatttgagatgtgggctccagatttttacgtggtgacgtataccggtgacaaagac
agcagagcaatcagcagggagaacgagtttacctttgaagacagcgcagtaaaatcagga
cgaaaagtgttccgcatgaagaaggacactcctatcaagttccatgtgttgctgacatcc
tatgagctgatcacaatagatcaagccattctgggctccatcacctgggcctgcctggtg
gtagatgaggcccacagactgaaaaacaaccaatcaaagtttttcagaattctcaatggg
tataagatctactacaagctgctgctgactgggactcctcttcagaacaacctggaggag
ctgttccacctgcttaacttcctcaccccagagcgtttcaataacctggaaggctttctg
gaggagtttgccgacatatctaaagaagaccagatcaagaagctccacgacctgctcggg
ccacacatgctcaggaggctgaaagctgatgtcttcaagaacatgccttcaaagacagag
ctgattgtcagagtggagctcagcccaatgcagaaaaaatattacaagttcatcttgacg
cgaaattttgaggctctgaactcaaagggaggagggaaccaagtatccctgctaaacatt
atgatggacctgaagaagtgctgcaaccacccctacctgttccctgtggctgctgtggag
gctcctgttttgcccaacggttcttatgacggcaaccaactggtgaagtcctcaggaaaa
ctgactctgcttcagaaaatgctgaagaatctcaaagatgaaggacacagggttcttatt
ttctctcagatgacaaagatgctggatctgctggaagattttcttgagtacgagggttat
aaatatgagcgtattgatggagggattactggaggcctaaggcaggaggccattgaccgt
ttcaatgcaccgggcgctcagcagttctgcttcttgctttccacacgtgctggaggtctt
ggcatcaacctggcgagtgcagacactgtaatcatctacgactctgactggaatccccac
aatgacatccaagcttttagcagagcccaccgcatcggccaaaacaggaaggtgatgatc
tatcgatttgtgacgcggggctcagtggaggagcgaatcactcaggttgcaaagaggaag
atgatgctgacccacttggtggtgcggcctggcctgggctccaaaactggctccatgtcc
aaacaagaactggatgacatcctcaagtttggtacagaggagcttttcaaggatgagatt
gaagcagcacgagccatgggtgacaacaaagatggtgaggagggcaatgtgattcactat
gacgacgatgccatctcaaagctgttagaccgcagccaggatgccactgaagacactgag
attcagaacatgaacgagtacctgagctccttcaaggtggctcagtatatggtgaaagaa
gaggacggagaggaggaggtggagcgggagataatcaagcaggaggagaacgtggaccca
gactactgggaaaaactcctccgccatcactacgagcagcagcaggaggatctggcccgc
aacctgggcaaaggcaaacgcatccgaaagcaggtcaactacaacgatacgacccaggag
gaccaagagtggcaggatgatctttcagacaatcagtcggagtactctgtggggtccgag
gacgaggacgaagatttcgaggagaggcctgaaggtgggcgcagacagtctcgtcggcag
ctgaagagtgagaaagacaaaccgctgcctcccttgctggcacgtgttgggggcagtatt
gaggtcctgggcttcaatgctcgccagaggaaagccttccttaatgccatcatgcgttgg
ggcatgcctccacaggatgctttcaactcccattggctggtgagggacctgagagggaag
agtgagcgtgaattcagggcctatgtgtctctgttcatgagacatctatgcgagccgggg
gcagatggagcagagacctttgctgatggagtcccacgtgagggactatctcgtcagcat
gttctcacccgaatcggagtcatgtcccttgtcaggaaaaaggtgcaagaattcgagcat
gtaaatggaaagctgagttctccggatctgattcccatcggcatggagctaaagaaactg
actgaaagtgtatcttctgatcccaacacccctgtgccagccagtcccatcgctacgcag
cccggcacccccatccctccagagaagccagagtctctcttgtgcgccgctgaggacaag
gagacctcggagcatgatagcaagaaactgtcagagcaggaaacttccagtgcagaggca
gcatctgtatcagagaaggcagctgacagtgaagagagcaaggccagctcagaggagaaa
acaggagatgagagagacagaaccgagtcgccctccaaaaaaaacgagccatctgtcaac
tcaaaagaacccactttgagacagtcagaactatcagccagtcagacctcaccgaaagtg
gagctctgcaaagaaacagagaaatgttcagagaaaggagatactgattatcctctggca
aaagcagaggacaaggaaaataagccagatgatttgaaaaatgaagatgcattagaggga
cgattaaacggcgataaagacatgctggatgagatggatgagagcaggagggaggacaga
aatggatttaaagccaagttcatgtttaatatcgctgatggtggttttacagagttgcac
accctttggcaaaccgaagagcgagcggcgctgtcttctggaaagatgcatgacatctgg
catcgtcgccatgactactggctcttggctggcattgtaacacatggctatgctcgctgg
caggatattcagaatgacccacgttatgctattctgaacgaacccttcaagacggagatg
cataagggcaactacctagagatgaagaacaagttcctggctcgtcggtttaagttgttg
gagcaagctctggtgattgaggagcagcttaggcgggcggcttacctgaatatgacccag
gacgccagtcacccagccatggctctcaacacacgcttcgctgaggtggaatgtctggcg
gagtcccaccagcacctgtccaaagagtctctggcagggaacaagcctgccaatgcagtg
ctgcacaaagtgctgaaccagctggaggaacttctgagtgacatgaaagcagatgtgaca
cgactgcccaacatgttgtccaggatcccgccggtgtcagcccgcctgcagatgtctgag
aggagcatcctcagtcgcctcaccagccgaggcagcgaacctccaccgcaacagcctttt
agccagggcgggtttggctgctcccagatgtacagcagcagctttggtggaggatataga
gggccaggtggacagccgatggtcaactacagccagatgcctctgggaccatatgttagt
gtgtcatctaatggccccccaccccctacaagccatttggacaagaagtcacttgactcc
ttgagagacgtggccacgcctgatctcaagtcagccaaacctagtgatgtcatctgcatt
gaagactag
DBGET
integrated database retrieval system
